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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTTTTCTACTGGGTGGTCCTATTCACACTTACAATGAGAAGACAAATATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAGgtaggtttaatatttttttttcattcaaaatgttgtggcaaatgttggttattaattctttaatggtgtttttatcaggattacatccatgttgctaatagtaagctttaattttgtctgttttacttttag

Basic information

species Glycine max
transcript GLYMA11G05620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACTCCTTTTCTACTGGGTGGTCCTATTCACACTTACAATGAGAAGACAAATATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAGgtaggtttaatatttttttttcattcaaaatgttgtggcaaatgttggttattaattctttaatggtgtttttatcaggattacatccatgttgctaatagtaagctttaattttgtctgttttacttttag
|||||||||||||||| |||| || ||||| || || ||||| ||||| |||   ||||||||||||||||||||||| || ||||| ||||| |||||||||  |   |||   || ||   || ||| |  ||||   |   |   || |      |||  |    || ||||  |||| | |||| |  |  |   | |||  || | || | | | ||          
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgta--tcctataaccttcttaattttaaact--tgtgatgatcatattttgtgctgcttttgct--ctttgttattgggatcatatccttagtttttgaactaaa-ttcatttctatttcttag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327674|gb|GR834639.1|GR834639
EST:     TATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAG                         CGCTACGCCGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCTTGGACTGA
genomic: TATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAGgtaggtttaa ... ttacttttagCGCTACGCCGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCTTGGACTGA
EST: gi|6746713|gb|AW317101.1|AW317101
EST:     TATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAG                         CGCTACGCCGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCTTGGACTGA
genomic: TATCACACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAACAGgtaggtttaa ... ttacttttagCGCTACGCCGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCTTGGACTGA