Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAACCAgtacgtgtttagcgtcattaattgctaagtgaagtattaattcatggcaattatggtggtggtagtagtaacttttaatttatgtacttttgtttgtttctgcctcggattgctcag

Basic information

species Glycine max
transcript GLYMA11G05510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05510.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 2
CTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAACCAgtacgtgtttagcgtcattaattgctaagtgaagtattaattcatggcaattatggtggtggtagtagtaactt--ttaatttatgtacttttgtttgtttctgcctcggattgctcag
|||| || ||||| || ||||| ||| | |||||||| |||||||||||   ||| ||||| |||  ||| |||||||| |||||||| |||||||||| ||  || |||       ||  ||      |    |  |   |   |     |||| || |  | ||     | |  || ||  ||| | |||||||||     |               
CTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAACCTgtgagtatttcagaatttttgttatgttttttgctggtgggtttagatgtgtatgatgattttggtgaagccctgtttgatgcatg-atttttgtttgcaatag---------------