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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAGgtaagtttcttcagaattatttcaataccttatatatttaagaatcagtatgcttacttacttgtgatcacatcctcag

Basic information

species Glycine max
transcript GLYMA11G05190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAGgtaagtttcttcagaa-----ttatttc-aataccttatatatttaagaatcagtatgcttacttacttgtgatc-------acatcctcag
|||||  | ||  |||| || |||||||||||||||||| |||||||||||| |||| || |||||| |||     |||| || ||||  |  ||| || || | | |  | | |  |  | | |    |       | ||   |||
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGgtgagcttcttctgaaatcaattatatctaatatttattatgtt-aaaacttaaaaggttctccaaatcgattcctcttgggatatttgcag

upper sequence: GLYMA11G05190.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAGgtaagtttcttcagaa-----ttatttc-aataccttatatatttaagaatcagtatgcttacttacttgtgatc-------acatcctcag
|||||  | ||  |||| || |||||||||||||||||| | |||||||||| |||| || |||||| |||     |||| || ||||| |  ||| || || | | |  | | |  |  | |||    |       | ||   |||
GAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTGCAATTTATCCAAGgtgagcttcttctgaaatcaattatatctaatacttattatgtt-aaaacttaaaaggttctccaaattgattcctcttgggatatttgcag