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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacctcttgctgtcactgccacttatctgatgatgtctggcttggtcggttaaattatgtttcatgatgcaggtttattgtattccatcgttcc...

Basic information

species Glycine max
transcript GLYMA11G04600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacctcttgctgtcact--gccacttatctgatgatgtctggcttggtcggttaaattat--gtttcatgatgcaggtttattgtattccatcgttcc
 || |||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| ||  | |||   |||   |  ||  ||||||  ||        |          | |   ||  | ||||     || | ||| | | ||  || |    
AGGTTGCTCTTTCTTTTATATGAGAATCAGCAATGTGTACATTGTGATTGTGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtcatctccttgtttttttgcatcttatcgaatttgactatgtccatataaatgagcaataagcttcagtcaacaaggttagtct-ttgaattgg---

upper sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacctcttgctgtcactgccactta-tctgatgatgtctggcttggtcggttaaattatgtttcatgatgcaggtttattgtattccatcgttcc----
 ||||||||||| || |||||| | ||||||||||| ||||| || | |||||| ||||||||||| |||| |||||| || || || || || |||||||||| |      | ||      |  |||    | | ||    ||   |||| ||   |   ||| | | |    ||||  |||   | |  |||  ||| |    
AGGCTGCTCTTTTTTGTACATGCGCATCAGCAATGTGTACATAGTCACTGTTGTTAGCAGCAATGCCAATGCAGCTTGCGCCTTCAAATTCGTGGTTGAGgtatgtc-ttattagcaagtcttctcacaagctttcattggatccaacttgatccagt--gtta-gatccggactgcaattttcacg-aagccagagtttcgttt

upper sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacctcttgctgtcactgccacttatctgatgatgtctggcttggtcggttaaattatgtttcatgatgcaggtttattgtattccatcgttcc
||| ||||| ||| | |||||| ||||||||||||| ||||| ||||| || |||||||||||||| ||||  || |||||| | || |||||||| ||||  | ||  || |    |    ||   ||  | |  | |    | |||   |    |   |  | |||||                              
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTTGTGGAGg--tctacactttcagagattttgtttctcttgttcttaaactttgctccttt--ctcgttggtttttcacag---------------------------

upper sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacctcttgctgtcactgccacttatctgatgatgtctggcttggtcggttaaattatgtttcatgatgcaggtttattgtattccatcgttcc
||| ||||| ||| | |||||| ||||||||||||| ||||| ||||| || |||||||||||||| ||||  || |||||| | || ||||| || ||||  | ||  || |    |    ||   ||  | |  | |    | |||   |    |   |  | |||||                              
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTCGTGGAGg--tctacgctttcagagattttgtttctcttgttcttaaactttgctccttt--ctcgttggtttttcacag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269849|gb|BM886105.1|BM886105
EST:     TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAG                         GCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA
genomic: TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacc ... atctttgcagGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA
EST: gi|120534698|gb|EH262831.1|EH262831
EST:     TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAG                         GCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA
genomic: TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacc ... atctttgcagGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA
EST: gi|254317185|gb|GR826130.1|GR826130
EST:     TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAG                         GCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA
genomic: TTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGgtatttaacc ... atctttgcagGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCA