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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAGATGGGGAGAAAGACCTAACTGCTGATGTACAGCGCCTTTATTCTCTGTTTGATGTTACACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTgtatccttttctacatcagtccttttattggcatattttattttattattaatttacttattaaaattttaaatataaatacctgtcaattggtaagtaa...

Basic information

species Glycine max
transcript GLYMA11G03840.1
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03840.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G39810.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAGAAGATGGGGAGAAAGACCTAACTGCTGATGTACAGCGCCTTTATTCTCTGTTTGATGTTACACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTgtatcctttt-ctacatcagtcctt--ttattggcatattttattttattattaatttacttattaaaattttaaatataaatacctgtca-attggtaagtaa
   || || |  ||  |  |  |  | |||||||| || |||||||||||||||||||||||| |  |  | ||||| ||| | ||  |  ||||||| |||||||||    | |||   | |||  |   ||  ||||    ||    | ||| ||| ||  || | | |||    || |||  || | | ||| ||| |   
TCGGATGAGGATGAACATCAATTGGCAGCTGATGTTCATCGCCTTTATTCTCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttcagttgcatttatgcttggtgtctgatatatgcatttagtcttttagtttcctgtttgatacttt---catgaatttcttttagattcgtatgct-

upper sequence: GLYMA11G03840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0299g00030.t01 (Vitis vinifera), 5'ss of exon 1
AGAGAAGATGGGGAGAAAGACCTAACTGCTGATGTACAGCGCCTTTATTCTCTGTTTGATGTTACACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTgtatcctttt----ctacatcagtccttttattggcatattttattttattattaatttacttattaaaattttaaatataaatacctgtcaattggtaagtaa
| ||| ||| | |||||  | |  |||||||||||||| |||||||||||| ||||||||||| |  | ||||| |||||||||||||| |||||||| ||||||| |||     | | | |||  | ||  |   || ||||    ||| ||| ||||   | || | |   |||   | |||| |   |  ||  |||  | 
AAAGATGATAGCGAGAAGCAACAGACTGCTGATGTACAACGCCTTTATTCTTTGTTTGATGTTGCCATGGAGAACAACTTGGTTTCTTTGATTTGCCATTgtatccctttgttgttcctttagttgtcttcattagatgttttggcatatgatttatttttattttcacaaactaa-cgtgaatatca--ctgtttttaacga-