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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGgtcagtctgtgcaatctttggcataacaagaatcctaagatagtttaattcataatttcatcctattttactgttaaaagttgaagcatgcaatgtgtta...

Basic information

species Glycine max
transcript GLYMA11G02570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02570.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 5'ss of exon 4
AAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGgtca-gtctgtgcaatctttggcataacaaga-atcctaagatagtttaattcataattt-catcctattttactgttaaaagttgaagcatgcaatgtgtta--------------------------------------------
||| || ||| |||||||||||||||| ||||| |||||||||   ||| |  ||||||| ||||||||||||| |||| | ||||||||||| || ||||| | |        |||  ||   ||||         || |  | ||| | | || ||||      |    | |  |  | |  |  ||   | ||  | ||                                             
AAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTGCTCCTCTTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgcgcactgcatccctgtattaacttcttgctttatgtgattttcagttatgatttgtgcattgccatgccatatatatcttcagtccgaaagtttttttttttgccagcagttgatccaatccgaaacgtctattcttgtag

upper sequence: GLYMA11G02570.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 5'ss of exon 4
AAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGgtca-gt-ctgtgcaatctttggcataacaagaatcctaagat-agtttaattcataattt-catcctattttactgttaaaagttgaagcatgcaatgtgtta----------------------------------------
||| || ||| |||||||||| ||||| ||||| |||||||||   ||| |  ||||||| ||||||||||||| |||| | ||||||||||| || ||||| | || | ||||| ||  ||   ||||      | | |  | | ||| | | || |||| |    |    | |  |  | |  |  ||   | ||  | ||                                         
AAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGTGCTCCTCTTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgcagtgca-tccctgtattaacttcttgctttatttgattttcacttatgatttgcgcattgccatgccatatatatcttcagtccgaaagtttttttgccagcagttgatccaatccgaaacgtctgttcttgtag

upper sequence: GLYMA11G02570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G111579_T01 (Zea mays), 5'ss of exon 3
AAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGgtcagtctg--tgcaatctttggcataacaagaatcctaagatagtttaattcataatttcatcctattttactgttaaaagttgaagcatgcaatgtgtta--
||| || ||| |||||||||| || |||||||| ||||||||    ||| |  ||||||| ||||||||||||| |||| | ||||| ||||| |||||||| | |     | || |   |  | |    || ||| ||    |  |    || || |||     | | ||||  ||     |||    |   |||    ||  
AAGCATCTCACTAGAACCTGGAGGCCAATTTGAACTTAGTGGCGCTCCTCTCGAAACATTACATCAAACTTGTGCTGAGGTCAATTCGCATCTTTATCAGgtaacttctcttacattgcattccttgtacagcatcttacagaaactatgatcttagtttg--tgtgtgttaccattctt--ttgtcagagataatacagtacc