1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctcttatctatttcccttctcaattgctattcattgtgattttagatatttaatcaattcgattggttcatgcccgatagataaataaataaatagttgtttgtgctgcattcatgttatgaagggttttctgctttcag
species | Glycine max |
transcript | GLYMA11G02560.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG GACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|7684946|gb|AW755594.1|AW755594
genomic: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctctta ... ctgctttcagGACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG GACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|209710880|gb|BW653641.1|BW653641
genomic: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctctta ... ctgctttcagGACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG GACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|10238807|gb|BE807695.1|BE807695
genomic: TTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctctta ... ctgctttcagGACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: GGCCAAAAGCCTTATGTTGCAATTATTAAG GACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|112361178|gb|EE400156.1|EE400156
genomic: GGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctctta ... ctgctttcagGACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: GAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG GACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
genomic: GAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctctta ... ctgctttcagGACATTACACAGTCTATCAATGGCAACGTGAAAGTGACGGGGCAGTGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAGgtacctcttatctatttcccttctcaattgctattcattgtgattttagatatttaatcaattcgattggttcatgcccgatagataaataaataaatagttgtttgtgctgcattcatgttatgaagggttttctgctttcag
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - GGAGAA