Sequence
atgc intronic sequence ATGC exonic sequenceTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGgtttgaatcacactgccgacacaattaattcagctagctagctagcactaccaggcatttttgaattatgatcagtccattttttcattgtttgctcttc...
Basic information
species | Glycine max |
transcript | GLYMA11G02400.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9902970|gb|BE611938.1|BE611938EST: CCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAG ATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAA
genomic: CCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGgtttgaatca ... ggaaatgcagATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGgtttgaatcacactgccgacacaattaattcagctagctagctagcactaccaggcatttttgaattatgatcagtccattttttcattgtttgctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT