1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGgtatcattaactctcttttttcagctaaaattgaaaaatacgcttcttataataaacactctatcgcttgagcttaggagcagagttgtacgatggctgt...
species | Glycine max |
transcript | GLYMA11G02070.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAG ATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAAEST: gi|21995086|gb|BQ786614.1|BQ786614
genomic: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGgtatcattaa ... ctttgtgcagATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAA
EST: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAG ATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAAEST: gi|151395175|gb|EV265046.1|EV265046
genomic: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGgtatcattaa ... ctttgtgcagATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAA
EST: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAG ATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAA
genomic: GTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGgtatcattaa ... ctttgtgcagATTCCCAGTCTCTTCAGTGGAAGATGTGTAAAAGCTTTGGAAACAGTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATCGTGAAGATTGTTTGGATTCCGCCAGAATATGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTCGCAGAAGgtatcattaactctcttttttcagctaaaattgaaaaatacgcttcttataataaacactctatcgcttgagcttaggagcagagttgtacgatggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata