1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcattttctacatccctgctatatatgaatttattttatatgtctctgaggttggttatttgatgtagtttctttgcgcctcgtttggtttctaa...
species | Glycine max |
transcript | GLYMA11G01960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTG GAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCEST: gi|192295390|gb|FG987004.1|FG987004
genomic: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcatt ... caatttgcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGC
EST: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTG GAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCEST: gi|20812619|gb|BQ297097.1|BQ297097
genomic: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcatt ... caatttgcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGC
EST: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACT- GAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGCEST: gi|192305248|gb|FG997528.1|FG997528
genomic: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcatt ... caatttgcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGC
EST: CGGTCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTG GAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGC
genomic: CGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcatt ... caatttgcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAGTACCTGGAGGAAGTTGAGGAACGGGAACTGgtaagtcattttctacatccctgctatatatgaatttattttatatgtctctgaggttggttatttgatgtagtttctttgcgcctcgtttggtttctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA