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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctgactgacttaaacttatgcactgaaatttttccatggtaaagaaaattgcatgaagttatattcaatcttatcctgcccactttttccttt...

Basic information

species Glycine max
transcript GLYMA11G01940.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctg-actgacttaaacttatgcactgaaatttttccatggtaaagaaaattgcatgaagttatattcaatcttatcctgcccactttttccttt
 |||||||| || ||||| ||||| |||||||| || |||||| | || |||||||| ||||||||||||| ||| |||   ||||  ||||| ||||||||||| | |  | ||    ||| |||  |  |  || || | | || |         |   |    |  | ||  || | |   ||     |  || | | 
CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACTGGGgtatgttttccattgttagaaagttactctattcaacttctacttgtttgttggctgtttttagtctgtttttagatgtcacattgatatataattgcat-

upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctg-actgacttaaacttatgcactgaaatttttccatggtaaagaaaattgcatgaagttatattca-atcttatcctgcccactttttccttt
 |||||||| || ||||| ||||| |||||||| || |||||| | || |||||||| ||||||||||||| ||| |||   ||||  ||||| || |||||||| | || | || |   |  ||| |   |  |  | ||   |  |    |    ||  |  | ||   |    |    ||  ||   ||| ||   |  
CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACCGGGgtatgttttgcattgtcagcatattacgttattcatctctttggttatttgcatgtgtgtctagatttgcttatgtagtaaatattgtgaactattaaat--

upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: EFJ35039 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctgactgacttaaacttatgcactgaaatttttccatggtaaagaaaattgcatgaagttatattcaatcttatcctgcccactttttccttt
 ||||||||||| ||||| |||||||| ||||||||||| ||  || | || |  |||||||| ||||| || || ||    || |  || || || |||||    ||| | ||  ||    |    || |  | ||| |  |   | ||      |||     ||| | ||   ||| |                    
CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgt-cagtctcaatgcttttttttatcacattttattttctgtacattgaa------tgctcatggtt-tcttacctctgacggcag--------------

upper sequence: GLYMA11G01940.3 (Glycine max), 5'ss of exon 5
lower sequence: EFJ17435 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctgactgacttaaacttat-gcactgaaatttttccatggtaaagaaaattgcatgaagttatattcaatcttatcctgcccactttttccttt
 ||||||||||| ||||| |||||||| ||||||||||| ||  || | || |  |||||||| ||||| || || ||    || |  || || || |||||  |     |   | ||    ||||  || |  | ||| |  |   | ||      |||     ||| | ||   ||| |                    
CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgtcagtctcaatgcattt---tttatcacattttattttctgtacattgaa------tgctcatggtt-tcttacctctgacggcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902956|gb|BE611924.1|BE611924
EST:     CTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGG                         GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCG
genomic: CTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACTGGGgtatgctctg ... attttgtcagGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCG