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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGACTCCAATAGATGGTGAATTTGATGATTACATCATTAATCCAAAGCCTAGTGGCTATCAGgttaggctttccttttcattttttcacaacataaaattaaaatgatcttgttcttctagtcttgagaattgtgcttgtgattgtattaacgtgtttaaattgcag

Basic information

species Glycine max
transcript GLYMA11G01410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01410.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 12
GCTTTGGACTCCAATAGATGGTGAATTTGATGATTACATCATTAATCCAAAGCCTAGTGGCTATCAGgttaggctttccttttcattttttcacaacataaaattaaaatgatcttgttcttctagtcttgagaattgtgcttgtgattgtattaacgtgtttaaattgcag
||||||||| || || |||||||||||||||||||||||  | ||||||||||||||||||||||||||||    |||   ||    | |  |  | ||  ||| ||    || |     |   |      ||     ||| ||   | |     || |   || || ||| 
GCTTTGGACCCCCATTGATGGTGAATTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGgttaaaaattctgctttcaatctcta-gatatttaatgaattccatttaaccatatgaac----aggtgcatgcatgcattggagcatacatacatatatagcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258122|gb|BE346269.1|BE346269
EST:     ATGGTGAATTTGATGACTACATCATTAATCCGAAGCCTAGTGGCTATCAG                         TCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAA
genomic: ATGGTGAATTTGATGATTACATCATTAATCCAAAGCCTAGTGGCTATCAGgttaggcttt ... taaattgcagTCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAA