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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaagaatttcatccaataatctttttaaaatccccttgcttc...

Basic information

species Glycine max
transcript GLYMA11G00210.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g39280.1 (Oryza sativa), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggt---ttta-tatcatgttcatc-gcttggacggttaaactttaattttctttcttattaagaatttcatccaataatctttttaaaatccccttgcttc
 || ||  | ||||||||  | |||||||| || || ||||| | ||| ||||| ||||||||| |||| ||||||||||||||||| || ||||| || |||| ||   |||| ||   ||  |||  || ||||  |||    | |    |  | |  | ||  |    | |       |    | |  || ||  | |    
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGgtattgtatatttactaggttgcccatttgcctggaatgtttgtatatgccgtcttgtgctcttgtgtggctgaaggtgcgaaacctctgcaaacctgtag----

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AC194970.5_FGT005 (Zea mays), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaagaatttcatccaataatctt---tttaaaatccccttgcttc
 || ||  | ||||||||  | |||||||| || || ||||| |  || ||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||| |  |||    |  ||    |  |   | |  ||  |        ||| | |      |  || | ||       ||    || | ||||  |       
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCGCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGATTCTACCAGgtacgcctttgctccgagtctgacagtaccaggcctacgccg-ggccatctatttggacctgggttgcttctgtgtggctcaagttgagaatctgcag-----

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055216_T01 (Zea mays), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatg---gttttatatcatgttcatcgcttggacggttaaactttaat---tttctttcttattaagaatttcatccaataatctttttaaaatccccttgcttc--
 || ||  | ||||||||  | |||||||| || || ||||| |  || ||||| ||||||||| | |||||||||||||||||||| || |||||||| ||| |       |         | |  ||     |||     | |           ||||    |  |    |  |         |   | ||         || |  
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCTCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGCTTCTACCAGgtacgtacaccctgctctgctctgacagcgccagcggcagcgcctacgccggccattttcggcctgggttgcttgtgtgcgcgcgtggctgaagctgggaacctgcag

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G42420.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctt--tcttattaagaatttcatccaataatctttt--taaaatccccttgcttc-----------
||| ||||||||||||||||||||||||||  | || || ||| | |||||  | |  |||||||| || ||||||||||| |||||||| ||||||||||||    || || ||    ||    ||||  |   || | |  ||||   ||  | | |  |   ||    |   ||  |  |||  |  | || | ||  ||            
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgta---attcatctcgatctcgat-cttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattcacatttttttgtgttgattag

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G76670.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaagaatttcatccaataatctttttaaaatccccttgcttc
||||||| | ||||||||| | ||||||||| | ||||| ||||| |||||| | |  ||||||||||| || ||||||||||| ||||| ||||| || |||   || | |   |  ||      || |    ||  | |  ||  || ||  || | |      | || || |  ||  ||||               
TGTTCCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTATCGCTGCTATGAACTTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGgta-acttgtcttggagatttgctctttcggttattcgattgaaagattgttgttt-tgattttgcttattcattt-tcactttag--------------

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaaga-atttcatccaataatctttttaaaatccccttgcttc--
||||||| | ||||||||| ||||||||||||| ||||| ||||| || ||| | |  ||||| ||||| || ||| | ||||| ||||| |||||||| |||  | ||  | |    ||   |  ||   |  ||     | |||||   ||    ||||||   ||| ||  ||| ||    |    |    || |     
TGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttc-tctttgattttgcattttcccaatt---tctcaatttagctt----ttaagatggttcttctgatagtccacattgtgtttgatttcaatag

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G42420.2 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctt--tcttattaagaatttcatccaataatctttt--taaaatccccttgcttc
||| ||||||||||||||||||||||||||  | || || ||| | |||||  | |  |||||||| || ||||||||||| |||||||| ||||||||||||    || || ||    ||    ||||  |   || | |  ||||   ||  | | |  |   ||    |   ||  |  |||  |  | || | ||  || 
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgta---attcatctcgatctcgat-cttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattcacattttttt

upper sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaag---aatttcatccaataatctttttaaaatccccttgcttc
||||||| ||||||||||| | ||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||| |  ||  ||  | | |  ||  | | |||     | | ||||||| |||     |||     | | | |  |  ||    | | | ||   ||   || 
TGTTCCTTTGTGGGAGCTTCTCTGGTTCTCAATTGTAGCCAATATGTCTATCACAGGGATGAACTTGAGCCTCATGCTAAACTCAGTTGGATTCTATCAAgtaagaattactaaaacgct--tcattggtacgtactta-tgtaattttttttaacggtaaatttgagtacctttataaacgggtatgatattaactaatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254313902|gb|GR831531.1|GR831531
EST:     TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA                         ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: gi|192308012|gb|FG998995.1|FG998995
EST:     TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA                         ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: gi|209717746|gb|BW654034.1|BW654034
EST:     TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA                         ATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT
EST: gi|61241601|gb|DN590994.1|DN590994
EST:     TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA                         ATATCAGAACTGAGCATGATTCCTGTGGGTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcccagATATCAAAACTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTT