Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaatgtagccgccatattgcgtgcattctttctgtcaatcttattggtaagacaaaaaaaaaacccacttgagaaatcactgatgaggagattgcaactttttgagtgcag
Basic information
species | Glycine max |
transcript | GLYMA10G43930.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G43930.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G04680.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaatgtagc-cgccatattgcgtgcattctttctgtcaatcttattggtaagacaaaaaaaaaacccacttgagaaatcactgatgaggagattgcaactttttgagtgcag
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GTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccag-------------------------------------
upper sequence: GLYMA10G43930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0066g02630.t01 (Vitis vinifera), 5'ss of exon 2
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaatgtagccgccatattgcgtgcattctttctgtcaatcttattggtaagacaaaaaaaaaaccc-acttgagaaatcactgatgaggagattgcaactttttgagtgcag
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GTTTTTACTTGGTATGGAGCCACAATTGAAATGGATGGTATTACAGAAACTGATTATACTGCCGATGAGgtatgcctttttt-tttttttgtagc-tttattgcc-cagtaattcagactaattatagtagcatattccttgatttcag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213607822|gb|DB959133.1|DB959133EST: CAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAG ACTCCAATGGTCAGTTATGTAAATGTACATGCTGTGCTGGATGGAAGAAGA
genomic: CAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaat ... ttgagtgcagACTCCAATGGTCAGTTATGTAAATGTACATGCTGTGCTGGATGGAAGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGgtaagccaatgtagccgccatattgcgtgcattctttctgtcaatcttattggtaagacaaaaaaaaaacccacttgagaaatcactgatgaggagattgcaactttttgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG