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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaaagtttttgttttgcattccctaaaatcaattccttatctttttccccttccctctattttttttttttattgattttactgatttggtgt...

Basic information

species Glycine max
transcript GLYMA10G43810.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43810.4 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 2
TCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaaagtt-tttgttttgcattccctaaaatcaattccttatctt---tttccccttccctctattttttttttttattgattttactgatttggtgt
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TCCAGTTTCAAGGGTAAAAGGCCTTCCATGGAGGATTTCTACGAGACTAGAATATCAGAGGTTGATGGTCATATGGTAGCCTTCTTTGGTGTTTTTGATGgtacatctcaacttctttaaccaccaaactttggtctaggtgttgtatttaaggtgttctttaatcaggggcagagatcactactgaat--actgat--ggtat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315402|gb|FK009204.1|FK009204
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
EST: gi|298180459|gb|HO022012.1|HO022012
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAATAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA
EST: gi|207834145|gb|GD808958.1|GD808958
EST:     ATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAG
genomic: ATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTG-TTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAG
EST: gi|298191566|gb|HO039045.1|HO039045
EST:     AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATG                         GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAATAATCTGTTTAAGA
genomic: AATATCAGAGGTTGATGGTCAGACAGTTGCGTTTTTTGGTGTTTTCGATGgtaagtctaa ... attcttttagGTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGA