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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta...

Basic information

species Glycine max
transcript GLYMA10G43770.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattg--ctgttattcctctttattttagtgta---
| | ||| || | || || |||||||| ||||||    | || |||||||||||||| ||||||||| | |||||||||||| | || || ||| ||||||| ||||     ||   | ||||    | |||   |||   |  | ||   |   |  | |  |  ||| ||||  ||   | | || |     |   ||     
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatac---ttatgttccttgcgtctacttc--aatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgaggctagctgggttt

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55170.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta
| | ||  | || || || ||||| ||||||||||  ||||| ||||||||||| || |||||||| || |||||  | ||||| || ||||| |||||||| | |      |    |   ||  || | || |     |   |  |||||  | ||| ||  |   ||   |                           
GTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGATCTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGgtattt------tgaattcagtgacatgctttgttttggtccatacttcatg-actttttctctgcattggatag-------------------------

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0317g00130.t01 (Vitis vinifera), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcct--ctttattttagtgta
||| ||  ||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||| | | || || ||||| ||||  ||    | ||        || |  || | || | |   ||||| | ||   ||        |  ||||||  ||| | |      || || ||  | | 
GGCTGCTCTGAGGGAAGCCTACAAGAACAAGAAGTACTTGCCACTTGATCTGCGCCCCAAGAAGACCAGAGCCATTCGCAAGCGACTCACCAAGCATCAGg--taatccttctttttgatatgatgctcttgttgatttgttgtttctaatattttccggttgaaggttcatttttgtgaatatcaatttaatctttctttt

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36167 (Selaginella moellendorffii), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta
||||  | |||| || ||||||||||||||||||||| ||||||| ||||| || || ||||||||| | || ||  |  |  |  | || || || |||||  | |     |  || |  |     |  |   |  | ||    |||| ||| |   |                                         
GGCCAAGCTGAGAGAGGCCTACAAGAACAAGAAGTACATGCCTCTGGATCTTCGTCCCAAGAAGACCCGAGCGATCAGGCGACGCTTGACAAAACATCAGgtaaaca---attttccattgtagaggtggtggcagctttaaaactttctttcttcgcag----------------------------------------

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18646 (Selaginella moellendorffii), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta
||||  | |||| || ||||||||||||||||||||| ||||||| ||||| |  || ||||||||| | || ||  |  |  |  | || ||||| |||||  | |  |   |  || | |   |        |  |  | | |||  |    | |  |   | ||| | | || |                       
GGCCAAGCTGAGAGAGGCCTACAAGAACAAGAAGTACATGCCTCTGGATCTTCATCCAAAGAAGACCCGAGCGATCAGGCGACGCTTGACAAAGCATCAGgtaaacaatttagaatctccattgcag-------aggtggaagctttaaaactttctcgtttgtgttt-cttcgcag-----------------------

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36169 (Selaginella moellendorffii), 5'ss of exon 2
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta
||||  | |||| || || |||||||||||||||||| ||||||| ||||| || || ||||||||| | || ||  |  |  |  | || ||||| |||||  | |  |   |  ||    ||  |      |  | |  | | |  | |   |||  ||                                       
GGCCAAGCTGAGAGAGGCGTACAAGAACAAGAAGTACATGCCTCTGGATCTTCGTCCAAAGAAGACCCGAGCGATCAGGCGACGCTTGACAAAGCATCAGgtaaacaatttagaatctagaggtggtggaagctctaaaactttctcgcttgtgtttcttcgcag-----------------------------------

upper sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18648 (Selaginella moellendorffii), 5'ss of exon 3
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttata-tgtgctacccttcttgttattcc--ttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta
||||  | |||| || || |||||||||||||||||| ||||||| ||||| || || ||||||||| | || ||  |  |  |  | || || || |||||    | | | | |   |    ||  |  |   | | ||  | | |  ||  |   ||||  ||                                      
GGCCAAGCTGAGAGAGGCGTACAAGAACAAGAAGTACATGCCTCTGGATCTTCGTCCCAAGAAGACCCGAGCGATCAGGCGACGCTTGACAAAACATCAGgtaagcaattttccattgtagaggtggtggcagctctgaaactttctcgtttgtgttttttcgcag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207748519|gb|GD720356.1|GD720356
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193587493|gb|FK540862.1|FK540862
EST:     AGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: AGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207695404|gb|GD678131.1|GD678131
EST:     GGCTTACTAAGTCTACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: GGCTTACTAAG-C-ACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|208276665|gb|GE077031.1|GE077031
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208324569|gb|GE120620.1|GE120620
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|31462164|gb|CD404192.1|CD404192
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193326286|gb|FK289339.1|FK289339
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207785140|gb|GD755657.1|GD755657
EST:     GGCTTACTAAGCTACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: GGCTTACTAAGC-ACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|207805618|gb|GD779887.1|GD779887
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207729288|gb|GD709116.1|GD709116
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208270333|gb|GE071229.1|GE071229
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208221678|gb|GE018646.1|GE018646
EST:     GGCTTACTAAGTCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: GGCTTACTAAG-CACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|207726710|gb|GD702452.1|GD702452
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|6454879|gb|AW185628.1|AW185628
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193319258|gb|FK286430.1|FK286430
EST:     CCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGGGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|8285184|gb|BE022743.1|BE022743
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193302006|gb|FK266533.1|FK266533
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208265475|gb|GE062667.1|GE062667
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207803234|gb|GD774867.1|GD774867
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208323797|gb|GE120030.1|GE120030
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|6095021|gb|AW119688.1|AW119688
EST:     TCCGCCCTAAGAAGACCAGTGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGACAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|4396288|gb|AI495285.1|AI495285
EST:     TCCGCCCTAAGAAGACCAGTGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|7693107|gb|AW761205.1|AW761205
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAAAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208305065|gb|GE102794.1|GE102794
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193403067|gb|FK369013.1|FK369013
EST:     CCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: CCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAA-GCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|5820489|gb|AI988695.1|AI988695
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208266357|gb|GE065504.1|GE065504
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193517530|gb|FK474821.1|FK474821
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208308401|gb|GE102885.1|GE102885
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207826479|gb|GD798190.1|GD798190
EST:     GCAGGGGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193608278|gb|FK555259.1|FK555259
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207812149|gb|GD785596.1|GD785596
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193547961|gb|FK505130.1|FK505130
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208112886|gb|GD908845.1|GD908845
EST:     GGAGGCTTACTAAGCACCGG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCTACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|5126661|gb|AI748397.1|AI748397
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|8285734|gb|BE023293.1|BE023293
EST:     GGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193380721|gb|FK346004.1|FK346004
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTG-AAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|193366449|gb|FK332815.1|FK332815
EST:     GGCTTACTTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTAC-TAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193395045|gb|FK360450.1|FK360450
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208242782|gb|GE039288.1|GE039288
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|9901023|gb|BE609989.1|BE609989
EST:     TCCGGCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTTCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207744929|gb|GD717299.1|GD717299
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|5678027|gb|AI939157.1|AI939157
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193625491|gb|FK577479.1|FK577479
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|31308365|gb|CD393568.1|CD393568
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208247931|gb|GE044913.1|GE044913
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193533169|gb|FK493689.1|FK493689
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208313797|gb|GE114239.1|GE114239
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207834240|gb|GD808997.1|GD808997
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTA
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|6666521|gb|AW277915.1|AW277915
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207791530|gb|GD763241.1|GD763241
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|7589459|gb|AW705232.1|AW705232
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208094341|gb|GD894024.1|GD894024
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208141548|gb|GD939096.1|GD939096
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|213596587|gb|DB974063.1|DB974063
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193431013|gb|FK393763.1|FK393763
EST:     CCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208321472|gb|GE125545.1|GE125545
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|7638974|gb|AW733306.1|AW733306
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208069328|gb|GD872862.1|GD872862
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193435564|gb|FK400736.1|FK400736
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|308098842|gb|HO760683.1|HO760683
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208188230|gb|GD982298.1|GD982298
EST:     GGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|18039257|gb|BM307551.1|BM307551
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207705430|gb|GD688344.1|GD688344
EST:     CATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193303092|gb|FK266658.1|FK266658
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208042909|gb|GD841853.1|GD841853
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193368052|gb|FK331618.1|FK331618
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|207802469|gb|GD774357.1|GD774357
EST:     CCCTAAGAAGACCAGGGCCATTCGCAGGAAGGACTTAACTAAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
genomic: CCCTAAGAAGACCAGGGCCATTCGCAGG-AGG-CTT-ACT-AAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACT
EST: gi|208254353|gb|GE054763.1|GE054763
EST:     CGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193477984|gb|FK439213.1|FK439213
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193614777|gb|FK561037.1|FK561037
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208257540|gb|GE051383.1|GE051383
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|193663996|gb|FK614232.1|FK614232
EST:     CGCAGGAGGCTTACTAAGCGCCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: CGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|6094766|gb|AW119495.1|AW119495
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|7639692|gb|AW734009.1|AW734009
EST:     TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTGCCACTG
genomic: TCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
EST: gi|208275927|gb|GE080269.1|GE080269
EST:     GGAGGCTTACTAAGCACCAG                         GCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG
genomic: GGAGGCTTACTAAGCACCAGgtttatatgt ... gttcatgcagGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAGTTATATTTCCCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattgctgttattcctctttattttagtgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG