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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacatgcaagatcacagtgttccttggcgtgcaatattcaattcgggagatttg...

Basic information

species Glycine max
transcript GLYMA10G43720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55240.1 (Arabidopsis thaliana), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacatgcaagatcacagtgttccttggcgtgcaatattcaattcgggagatttg-
||  |||| ||||| ||||||||||| || |||| ||| ||||| ||  ||||||| |||||||| |||||||| || | |||| | || || || |||||| | |  |   |||||| |      ||       || |   |  ||   | |   |||    |   |          |    |   |  |     | |  
CACATGATAGAGAAATGTTTGATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCACTCCTGTCATCACCTCTACTGgttttaattcctctctctctctctc-ctcttttttaatactttttacctttccgtaatccttataaacacacaaacatatctgtacctatgtactctctaa

upper sequence: GLYMA10G43720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0317g00030.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatg-atctttactctctataaagagcttaaaccaaagagcatgcacacatgcaagatcacagtgttccttggcgtgca----atattcaattcgggagatttg
|| || || ||||| ||||||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||||| ||  | ||  | || || || || |||  | || |||    | | |     | |      ||| | |  |  |  ||  || |    ||||||  |        |    ||||||||||   | |     
CACCTAATAGAGAATTGTTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAACATCGAACCCGTCATCACCTCTACCGgttagtatttttcgagtttgtttgatggtgtttttaaaaaacg-gttctaatttaaaa----agtgtttttaaagaaaaattagatattcaattatagcgtcgat

upper sequence: GLYMA10G43720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0036g00440.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatga-tctttactctctataaagagcttaaaccaaagag---catgcaca----catgcaagatcacagtgttccttggcgtgcaatattcaattcgggagatttg-----------
|| ||||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| || || ||||||||  | ||  | ||  | || || || ||||||  |  |||||| |||| |  |  ||| ||  |          | |||| |    |||||| |   |   | |  | |    |  |  ||  ||| | ||  |  ||           
CACCTGATCGAGAAATGTTTGATCTTCCACATGACCAAAGAACAGTGCATGGAAGCCCTTTCCAAACATGCTGACATCCAACCAGTCATCACGTCTACTGgttagcctctttaatctccaagaccagcctactcgctgtcttttcctgcatagcatcatgcatgtgtatgttttctccttctctaaatcatataatactggtaacctgtggccctgcag

upper sequence: GLYMA10G43720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0317g00020.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATCGAGAAGTGTTTGATCTTTCACATGACCAAGGAAGAATGCATGGAAGCGCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACTGgtatgatctttactctctataaagagcttaaaccaaagagcatgcacacatgcaagatcacagtgttccttggcgt-gcaatattcaattcgggagatttg---------
|| ||||| |||||||| |||||||| |||||||  || ||||| ||||||||||| ||||| ||||||||| | || || |   | || || ||||| |||  | || ||    ||    | ||   |    | | | |  |||   | | |  | |||||    ||| |   || | ||||||    |    | ||||          
CACCTGATAGAGAAGTGCTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAGACATCAACCAAGTCATCACCTCCACCGgttagctcctttagatcatgcacgaatctctctctatgtgtttgc---ctttc--gttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcag