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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtatttgctacactttttttttctctattaacttcgatgatttaatatctgttttggagttctatattttcctaaatgattgcag

Basic information

species Glycine max
transcript GLYMA10G43480.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43480.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g49690.1 (Oryza sativa), 5'ss of exon 2
TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtat-----ttgctacactttttttttctctattaacttcgatgatttaatatctgttttgg-agttctatattttcctaaatgattgcag---------------------
 || ||||| || || || || || ||||| || |||||||| || ||||| || |||  ||||||||| |||||||||||||| ||||||||||| ||||| |      ||   || ||| | ||| | | ||    |   ||      | |  |||  |   |||||  ||  | ||   |   || |                      
CCCGGTGACCGTGTGCGGAGACATCCATGGGCAGTTCCATGACCTGATGAAGCTCTTCGCGACTGGGGGGCATGTGCCCGAGACGAATTATATTTTCATGgtgtggcttctggagcattttgtgtttatgtgtttctgtgtgtgtgagcttgttggttgagatggttctggatgatgctgtgttcctgaattcagctgtgcttcacgtgcag

upper sequence: GLYMA10G43480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G19980.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtatttgctacactttttttttctctatta-acttcgatgatttaatatctgttttggagttctatattttcctaaatgatt-gcag
|||||| || || ||||||||||| ||||| || || |||||||| ||||| ||||| ||||| || |||||||| ||||| || ||||| ||||||||||||     |   ||||| |  | |||  ||        |||| | | ||      |  | |  ||   |    |     ||| ||||
TCCAGTCACCGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACCGGAGGTCATGTTCCCGACACCAATTACATTTTTATGgtaccgagttttcttttgtggtgtcttgtatgacatattgatatgaaattatgaatacaatcataatctggtgtgggaaattcgcag

upper sequence: GLYMA10G43480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G50370.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtatttgctacactttttttttctctattaacttcgatgat---ttaatatctgttttggagttctatattttcctaa--atgattgcag
||| || || || ||||||||||| ||||| || || |||||||| ||||||||||||||||| || |||||||| |||||||| ||||| || ||||||||||     | ||| |   |||     |   ||   ||||    | ||||| |       ||||  ||  | |       ||  |  |||
TCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAACTTTTCCAGACCGGAGGTCATGTTCCCGAGACCAATTACATATTTATGgtat-----agactctgactttgggcgtaggctcgtatgacatatcaatatgtaacacatagtttaattatctgtgggggattttctcag

upper sequence: GLYMA10G43480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0071g00950.t01 (Vitis vinifera), 5'ss of exon 2
TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtatttgctacactttttttttctctattaacttcgatgatttaatatctgttttggagttctatattttcctaaatgattgcag---------------------------------
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||||||||||||     ||   ||   ||||    |||| ||  | ||  ||  |  ||  | ||| | |  | |||| | | | | |||  |                                  
TCCAGTCACTGTTTGTGGTGATATTCATGGCCAGTTCCATGATCTAATGAAACTTTTCCAGACAGGAGGTCATGTACCAGAGACTAATTACATTTTTATGgtaagatttatgattccgttttgagaatta-ctatggtgcctttttgacttctctggggattcagattt-catcattcatttaatttctatgagcttgtcctccttaatacttggtag

upper sequence: GLYMA10G43480.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S31_220V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTATATTTTTATGgtat---ttgctacactttttttttctctattaacttcgatgatttaatatctgttttggagttctatattt--tcctaaatgattgcag----------
||| || ||||||||||| ||||||||||| ||||| |||||  ||||||| ||||| |||||||| || ||||||||    |||||||| ||||| ||||||    |  ||| ||  || |||| |        |  ||   || ||||     ||      |  ||| |   || | ||| |||              
TCCTGTTACTGTTTGTGGCGATATTCATGGACAATTTCATGACTTAATGAAGCTTTTTCAGACTGGAGGACATGTGCCTAGTACAAATTACATTTTCATGgtacgcatctctagacgcttcttttttagggctgatgtgaaatttgaataatatattgatgaataaataatgaatcttcaataatttttttgaagtctca