Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgtatgcattttgttttgctcctctaattctgtatttgatgtgttatagtattacttgtttttcttgtgaggaaa...
Basic information
species | Glycine max |
transcript | GLYMA10G43220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G23300.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgtatgcattttgttttgctcctctaattctgtatttgatgtgttatagtattacttgtttttcttgtgaggaaa-------------------------------------------
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GGAAGGATATTGACAGGAGCTACCATTGGTCTGGCCATAGCTGGAGGAGCTTATGTTAGTACTGCAGATGAAGCAACCTTCTGgtactttacttaa-----taagtgccctgaa-acttagtctttttgttctctttgt-tagttgacattgctaaggctaccttgtagttactttgaggaagtcactttgttttttacctcttacctattttgtgtgttggacag
upper sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 2
GGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgtatgcattttgttttgctcctctaa----ttctgtatttgatgtgttatagtattacttgtttttcttgtgaggaaa
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GGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacattggatctccaaatg----atacactttgatcagaatcactgaagattcttttgtctgcttctcattgatcttttgttttattcctctactatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24206115|gb|BU965368.1|BU965368EST: CTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTG TGGATGGTTATTCTCGGCAACAAAACTTGTGAATCCCTTTTTTGCTTTGTT
genomic: CTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatt ... ctttttgcagTGGATGGTTATTCTCGGCAACAAAACTTGTGAATCCCTTTTTTGCTTTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgtatgcattttgttttgctcctctaattctgtatttgatgtgttatagtattacttgtttttcttgtgaggaaa
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC