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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTGGCCCTTACGGTACCTTCGTCGGTATCTATGATGGCCATGGAGGGCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgacaacaaaatgactcaattcttcaatcttttcattattggaatagattatacttcttgccttgctgtatttttgtctgcctttcagttccaa...

Basic information

species Glycine max
transcript GLYMA10G42910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42910.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 2
GAGTCTGGCCCTTACGGTACCTTCGTCGGTATCTATGATGGCCATGGAGGGCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttg--acaacaaaat---gactcaattcttcaatcttttcattattggaatagat-tatacttct-tgccttgctgtatttttgtctgcctttcagttccaa
|||||||||||||| |||||||| || || || |||||||| ||||| || ||||||||  | ||||  |||||||||||||| || || |||||||||||||||||    ||||   ||    | |     ||||||| ||||| |   || | | | | ||||  | | ||        | || ||  |||||   | |      
GAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAgtaagttactgcaactgtattgcaatttggaacttcaat-ttttcttagctgcattggctgtatatgtttatggtaaagaattttcttacctgccaaccgg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193362460|gb|FK324864.1|FK324864
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|208309645|gb|GE107203.1|GE107203
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|193668582|gb|FK608956.1|FK608956
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|15814409|gb|BI786684.1|BI786684
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
EST: gi|193481538|gb|FK445565.1|FK445565
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAA
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAA
EST: gi|208307540|gb|GE107568.1|GE107568
EST:     GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGA                         GATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC
genomic: GCCCGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgtaagttgac ... taaatgtcagGATTTACTTCAGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCAC