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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACCTGTGTGAGAGATAAAGCTGCGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaacgtttttttcatcaatataaatgattttattattacttgtgagattcaccatgaatgttacataatttttttccttttcacttatggtttt...

Basic information

species Glycine max
transcript GLYMA10G42250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACCTGTGTGAGAGATAAAGCTGCGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaacgtttttttcatcaatataaatgattttattattacttgtgagattcaccatgaatgttacataatttttttccttttcacttatggtttt
 || || ||||||||||| ||||||| ||| || |||||||  ||||||||||| ||||  |||| |||| | ||||||| ||   | ||  | |||||||| || | | |   |||   |     || || |     || ||  | ||  | |  | ||  |   ||   |  | ||||    |||  ||| | |    
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcactagattacgccgtt-ttgttagttggttcaatca-aagcttttttttttgttttgttgtttgtcttgtag----

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACCTGTGTGAGAGATAAAGCTGCGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaacgtttttttcatcaatataaatgattttatta-ttacttgtgagattcaccatgaatgttacat-aatttttttccttttcacttatggtttt
|||||| || ||||| || ||||||| ||| |||||||||||||||||  |||| |||||||||||||| ||||||||  ||| ||  ||  |||  ||||| || ||| | |  |||  | | | ||    || |  ||  |   || |     |  |  |  ||| |   | ||  ||  |  | || |   |       
GGAAACTTGCGTGAGGGAGAAAGCTGTGGATTCACTTTGTAGAATTGGTGCTCAGATGAGGGAGAGTGACTTGGTTGAGCATTTCACTCCTCTGGCTAAGgttagataaggctggtttacttattttatcaaatctctttggtcgattttattgattcctttccatgctctgtcaaacttaatattattaagccactaaa--

upper sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 1
GGAAACCTGTGTGAGAGATAAAGCTGCGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaacgtttttttcatcaatataaatgattttattattacttgtgagattcaccatgaatgttacataat--ttttttccttttcacttatggtttt
||||||| ||||||| |||||||| | ||||||  | ||||||||||| |||||||||| ||| | ||||||| || | |  |  || || ||||||||||| |  |||| | ||     || |  |   |  |||| || |     | |   ||     | | | ||   |     |||| |  |||     ||    || 
GGAAACCCGTGTGAGGGATAAAGCCGTGGAGTCTTTGTGTAGAATTGGTTCTCAAATGAAGGAAAATGATTTGATTAACTGGTTTATTCCTTTGGTGAAGgtgacttaac-tgttaccattctacttttgtattttttttttggtggggggtgttgcttcttattattttgtgggggttttgtaatttctgggtaaaaatt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336134|gb|GR841459.1|GR841459
EST:     TCAAATGAGGGAGAGTGATTTGGGTTGAATATTACATCCCGTTGGTGAAG                         AGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
genomic: TCAAATGAGGGAGAGTGATTTGG-TTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
EST: gi|209719391|gb|BW674471.1|BW674471
EST:     CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG                         AGATTGGCAGCANGTGAATGGTTTACTGCTCGAGTCTCTGCATGT
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGT
EST: gi|254343717|gb|GR857473.1|GR857473
EST:     CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG                         AGATTGGCAGCAG-TGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
EST: gi|23725947|gb|BU760948.1|BU760948
EST:     CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAG                         AGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA
genomic: CTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaac ... ttttgttcagAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGACTA