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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATTTGTTAAATGTTGATGATGAACTTGATCCATGGACCGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGTGCTTGCTTTCTTATgtgagtatttagctggataaattaatgtcaacaagtgctgaatttttatctacttggaaatttgttcttcaataaaattaattttctcccccccccctacttaatttttttatatcattgtatttaccag

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G110834_T01 (Zea mays), 5'ss of exon 2
CCCATTTGTTAAATGTTGATGATGAACTTGATCCATGGACCGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGTGCTTGCTTTCTTATgtgagtatttagctggataaattaatgtcaacaagtgctgaat-ttttatctacttggaaat-ttgttcttcaataaaattaattttctcccccccccctacttaatttttttatatcattgtatttaccag
     |   || ||  |  || |||  | ||||||||||| |||||||||||||||||||| || ||| |  | || || || ||  | |||||| | |||||||    |||         ||  | ||      ||  |||  ||||||  ||  | | ||  | || |  ||||| | |||    || |      || ||| | |||||                     
TAAGATCACTAGATCATTTTGGTGATGTAGATCCATGGACGGCATGGGCATACAAGCCTCGAACGATCTCGCTCTTGCTGATGGGAACATGCTTTTTAATgtgagctcatagtc-------tttttatc------tgtggaacattttatagacaggaacatgcttttttgaaataataataagggcctgcttggaacc-actcagtttttaag------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCATTTGTTA-AATGTTGATGATGAACTTGATCCATGGACCGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGTGCTTGCTTTCTTATgtgagtatttagctggataaattaatgtcaacaagtgctgaatttttatctacttggaaatttgttcttcaataaaattaattttctcccccccccctacttaatttttttatatcattgtatttaccag
     | ||    |||||||   ||| |||||||||||||| |||||||| |||||||||||||| ||| |  |  | |||||||| ||||| ||||| ||||||||              || | |     |   | ||    ||||| ||   ||   |||| |       |||   | | |||            ||||||                           
-GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtc-------------atcatttcttcctgcttcttcccttttacctctctgcccatttctc-----gtaatcctcaatttggttttgaattttacttag--------------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 2
CCCATTTGTTAAATGTTGATGATGAACTTGATCCATGGACCGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGTGCTTGCTTTCTTATgtgagtatttagctggataaattaatgtcaacaagtgctgaatttttatctac--ttggaaatttgttcttcaataaaattaattttctcccccccccctacttaatttttttatatcattgtatttaccag
 |   || | || ||||| |||||||| |||||||||||| |||||||||||||| ||||| |||||  |||| |||||||||||||| || ||||||||||||||          |||| |   |  || |   |  | ||||  |  |||    ||        || || ||||  || | || |    |        |                               
GCAGCTTATCAAGTGTTGGTGATGAACATGATCCATGGACTGCATGGGCATACAAACCTCGTACCATTTCATTATTACTTATTGGTGCATGTTTTCTTATgtgagtgacctatcaaataagtagtttacatc--ttattaaattgatggctatatctgttgtcagattattgaataggataatttatggtgctaattatgaa------------------------------