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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGgtataacctcttacccttttcactttatagacgagggaacttgtacaaatgttaggatgtataaattgattttgacgtatgtaacaagtttgattagttt...

Basic information

species Glycine max
transcript GLYMA10G40730.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33388365|gb|CA851572.1|CA851572
EST:     CTTCTTCACGNCTGTGNTTTTCCGTTCCACATCTGACCACAAACGAGACG                         TTGCCGAATTTTGTGGGAATGNGGAGTTATGCAGGCTCACTGAGCAGGTTG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGgtataacctc ... cttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTG
EST: gi|192297825|gb|FG988323.1|FG988323
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTG
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGgtataacctc ... cttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTG
EST: gi|192295492|gb|FG987106.1|FG987106
EST:     CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTAT
genomic: CTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGgtataacctc ... cttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTAT
EST: gi|209714541|gb|BW684890.1|BW684890
EST:     TTCTTCACGTCTCTGCTTTTTCCGT-CCACATCTGACCACAAACGAGACG                         TTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGT
genomic: TTCTTCACGTCTCTGCTTTT-CCGTTCCACATCTGACCACAAACGAGACGgtataacctc ... cttcttgcagTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGT