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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcaccacatatatccttgctactgtctaactggctgtgatgttataatagcaaagtggcctatctataacctaatttagtaattattgattttggagttgattttgcaaagcacccaaattttatcacagcatatttgattgttcaaaagtgctcttaattttaatcattgtgacag

Basic information

species Glycine max
transcript GLYMA10G40390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G40390.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 2
GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcaccacatatatccttgctactgtctaactggctgtgatgttataatagcaaagtggcctatctataacctaatttagtaattattgattttggagttgattttgcaaagcacccaaattttatcacagcatatttgattgttcaaaagtgctcttaattttaatcattgtgacag
||| | ||| |||| | | || || |||  | |  | |||||||| |||||||||||||||||||  ||| |||||  |||| | |||| |||||||||||||         | | ||  | |||  | ||   |  |||||   ||| |    || |       ||||  || | |  | ||     |   | ||||   |   |  |  |     |  |  |  | |    ||||  ||  |||||||                               
GAACGTACCACAATATTTTTACGGGCTTAATTCAGCTCAAATGGATATGTTCATGACAGAAGATAGCCCTGTCCGTAGGCAAGCGGAAAAAGTTACAGAGgtta-------gtttttctcttctaa-gccttcttatctgtgcatttacaggtccaga-------atctggaaac-agctaagaggagaacaaatttgct-tctctactatatgattcttatctcgtcttttggcatgcttctttgttcag------------------------------

upper sequence: GLYMA10G40390.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 2
GAATGCACCTCAATCTCTATATGGCCTTTCTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcaccacatatatccttgctactgtctaactggctgtgatgttataatagcaaagtggcctatctataacctaatttagtaatta--ttgattttggagttgattttgcaaagcacccaaattttatcacagcatatttgattgttcaaaagtgctcttaattttaatcattgtgacag
 ||||  || || | | | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||  | | ||| || |||||||||||||||||  |  |  || |  ||| |  |       | ||  |||| |  |   | | ||   |    |||     | ||  |   | ||| ||  |    || | |||  |                                                                            
AAATGTTCCCCAGTATTTTTATGGCCTTTCACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttcttcaaaactccctaat----ctcagctcactgt-acatccaagtggcttcgatttctaaaagaagccccag--aataactaaatcatcttagtagtcca----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603195|gb|DB960458.1|DB960458
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|207754636|gb|GD730295.1|GD730295
EST:     CATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAAG                         GAAAGCATTTCGTC
genomic: CATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGA-Ggttctcacca ... attgtgacagGAAAGCATCTCGTC
EST: gi|193444757|gb|FK404777.1|FK404777
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAA
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAA
EST: gi|213590543|gb|DB968107.1|DB968107
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|207764043|gb|GD738446.1|GD738446
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAAGAATTATATGGATAAT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAA-GAATTATATGGATAAT
EST: gi|163921554|gb|EH039313.1|EH039313
EST:     TGAAAGAGTTACAGAG                         GAAAGCCTCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|213608069|gb|DB972579.1|DB972579
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|13481168|gb|BG510511.1|BG510511
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|16348888|gb|BI974483.1|BI974483
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|209699127|gb|BW656167.1|BW656167
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|8283949|gb|BE021508.1|BE021508
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|193650443|gb|FK600256.1|FK600256
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATTAATGGTGGAATGTGGAG
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGAT-AATGGTGGAATGTGGAG
EST: gi|209703270|gb|BW678203.1|BW678203
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|193580836|gb|FK536855.1|FK536855
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|193656843|gb|FK606283.1|FK606283
EST:     ACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: ACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|193357421|gb|FK319245.1|FK319245
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|213603560|gb|DB962706.1|DB962706
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|298174223|gb|HO017559.1|HO017559
EST:     TCATGACAGAAGATAATCCTATCCGTCGGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|15812988|gb|BI785263.1|BI785263
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
EST: gi|10235517|gb|BE804405.1|BE804405
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgttctcacca ... attgtgacagGAAAGCATCTCGTCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT