1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaatctattatttgcttatcatgttttcctttagtggttgaggatgacttctcaattatgattattcagtatctcaaatatgattattcaatatctgcag
species | Glycine max |
transcript | GLYMA10G40340.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAAAAAGTAATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTG GCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTEST: gi|193526099|gb|FK481548.1|FK481548
genomic: GAGAAAAAGT-ATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaat ... atatctgcagGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATT
EST: GTAAAAAGTTATTAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTG GCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTEST: gi|207815823|gb|GD787028.1|GD787028
genomic: G-AAAAAG-TA-TAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaat ... atatctgcagGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATT
EST: AAAAAATATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTG GCCTTGACATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTEST: gi|193374451|gb|FK340327.1|FK340327
genomic: AAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaat ... atatctgcagGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATT
EST: GGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTG GCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTEST: gi|208216775|gb|GE013491.1|GE013491
genomic: GGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaat ... atatctgcagGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATT
EST: GGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTG GCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAAT
genomic: GGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaat ... atatctgcagGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaatctattatttgcttatcatgttttcctttagtggttgaggatgacttctcaattatgattattcagtatctcaaatatgattattcaatatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG