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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgttcatacaacataaaagttaccttaactaatcatgaaccaaagttaaactagcctcttattaggtgctcaactttgttgtgccctttttcag

Basic information

species Glycine max
transcript GLYMA10G39440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39440.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 2
TATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgttcatacaacataaaagttaccttaacta-atcatgaaccaaagttaaactagcctcttattaggtgctcaactttgttgtgccctttttcag
 || |||||||| |||||||  |||||||||||||||||| || |||| || ||||||||||| |||||    |  || ||| | |     | || |   | ||| ||  || | || |        ||  ||| | ||  | | |   |||  |  | |         
CATTTTGCATACCGGAGCTACGCAGTACCAGGACATTGCACTGCTGGACACGAAGCCCTTTGGGAAGgtctgaaattttatata-cggggtattttcaaaatctatattttgtatcatacccctgtaagtttctaagtattttccctgtttt-ctacgacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331927|gb|FK026711.1|FK026711
EST:     CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG                         GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
genomic: CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgt ... cctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
EST: gi|151411311|gb|EV281122.1|EV281122
EST:     CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG                         GCGTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC
genomic: CTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAGgttcacatgt ... cctttttcagGCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATC