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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTCCCTCCTGTTCCCTTGTTGAAGTCTTTTCTCAAGGATGCTAAGAAAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtactttttactcttgtttttattaatatctatatctatgattttctgtgttttttttttttgttcttgaatggatgaagtttttcataagcacttataa...

Basic information

species Glycine max
transcript GLYMA10G39330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042678|gb|AW472572.1|AW472572
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|254316673|gb|GR828210.1|GR828210
EST:     GCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: GCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|208149972|gb|GD944252.1|GD944252
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|208054695|gb|GD855742.1|GD855742
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|193699129|gb|FK636322.1|FK636322
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAACGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|254338755|gb|GR846937.1|GR846937
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|208061019|gb|GD857599.1|GD857599
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|6747371|gb|AW317827.1|AW317827
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|208143843|gb|GD942944.1|GD942944
EST:     AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|193405669|gb|FK373872.1|FK373872
EST:     GAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
genomic: GAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC
EST: gi|151400897|gb|EV270711.1|EV270711
EST:     AAGT-GCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCG                         TACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGAT-AAATGC
genomic: AAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtacttttta ... attttggcagTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGTTCCCTCCTGTTCCCTTGTTGAAGTCTTTTCTCAAGGATGCTAAGAAAGTTGCGGCTTCTATTTTGGAAGATCCTAACAATGCAGGCCGAGCTGCGgtactttttactcttgtttttattaatatctatatctatgattttctgtgttttttttttttgttcttgaatggatgaagtttttcataagcacttataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC