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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCAATCATTAAGGAAGTGTTCAATAAGGGTGTTACCTTCTTTGATACATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatattatccaactaattagtcttttttattttattttaattctaggtgttaaaagcacataatcatattgtattagtttcaaattgtaataactt...

Basic information

species Glycine max
transcript GLYMA10G38900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38900.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g04130.t01 (Vitis vinifera), 5'ss of exon 2
ATGTTCAATCATTAAGGAAGTGTTCAATAAGGGTGTTACCTTCTTTGATACATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatattatccaactaattagtcttttttattttattttaattctaggtgttaaaagcacataatcatattgtattagtttcaaattgtaataactt-
||||||| | || |||||||  ||  |||||||||| ||| ||||||||||||||||| |||| |||  ||||||||| ||||| ||||||||||| ||||||   | || | |    ||        | | | |  ||    | | ||   |    |   | | |  |  |||       |  ||   ||    |  || 
ATGTTCAGTTATAAAGGAAGCTTTTTATAAGGGTGTCACCCTCTTTGATACATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgttttttactttcaagct-caaatctgagtaaatcaggaatataaaagaaccatttagaaaggccaatttctcccttcacatggtgcttcactttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298199|gb|FG992049.1|FG992049
EST:     CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG                         GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|298169679|gb|HO021039.1|HO021039
EST:     CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG                         GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACGAAATTTGGT
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|151407405|gb|EV277220.1|EV277220
EST:     CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAG                         GCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATCTTTACGGACAAAATCATGATAATGAAATCATGGTTGGTAAGgtaacatatt ... cactcatcagGCTTTGAAACAACTTCCCCGAGAAAAAGTCCAGTTGGCTACAAAATTTGGT