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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCAATTATTAAAGAAGCATTCAATATGGGTGTTACCTTCTTTGACACATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatattatccaactaattgctttttttaattgattctaagagccaataatatattatcattttatatcagctgtagtttatatgatggtcaacaac...

Basic information

species Glycine max
transcript GLYMA10G38890.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38890.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g04130.t01 (Vitis vinifera), 5'ss of exon 2
ATGTTCAATTATTAAAGAAGCATTCAATATGGGTGTTACCTTCTTTGACACATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatattatccaactaattgctttttttaattgattctaagagccaataatatattatcattttatatcagctgtagtttatatgatggtcaacaac-
||||||| |||| || ||||| ||  ||| |||||| ||| ||||||| ||||||||| ||||||||   |||||||| ||||| || ||| |||||||||||   | || | |    ||   |   | | | |  ||    |     ||  |   |||   |      |    ||    || | ||| || |  ||    
ATGTTCAGTTATAAAGGAAGCTTTTTATAAGGGTGTCACCCTCTTTGATACATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgttttttactttcaagctcaaatctgagtaaatcaggaatataaaagaaccatttagaaaggccaatttctccc-ttcacatggtgcttcactttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899162|gb|BE608189.1|BE608189
EST:     AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|4396293|gb|AI495290.1|AI495290
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|9898893|gb|BE607861.1|BE607861
EST:     AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: AGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|192323154|gb|FK017035.1|FK017035
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
EST: gi|151393916|gb|EV263787.1|EV263787
EST:     CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAG                         GCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT
genomic: CATCAGATTTTTATGGACTTAATCATGATAATGAAATTATGATTGGAAAGgtaacatatt ... ctgtcttcagGCTTTAAAAGAACTTCCTCGGGAAAAAGTCCAGTTGGCTACAAAATTTGGT