1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttttcaattgtaatgagtcagtttttttctatttgcacttcttttttatattgtaagttgctatttgtgttttataattttccgttccttcta...
species | Glycine max |
transcript | GLYMA10G37840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|19269736|gb|BM885992.1|BM885992
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|213618406|gb|DB961579.1|DB961579
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|17021112|gb|BM092146.1|BM092146
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|120494562|gb|EH222729.1|EH222729
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|4287211|gb|AI441157.1|AI441157
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|42722526|gb|CK768425.1|CK768425
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|15663379|gb|BI700750.1|BI700750
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|21601409|gb|BQ611740.1|BQ611740
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|58022088|gb|CX708829.1|CX708829
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|151396437|gb|EV266314.1|EV266314
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|7042161|gb|AW472055.1|AW472055
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTTATAAGAGAGGTTGCTEST: gi|18730445|gb|BM525882.1|BM525882
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|16342062|gb|BI967657.1|BI967657
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCCCCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGANNCTCATAAGAGAGGTTGCTEST: gi|151412115|gb|EV281927.1|EV281927
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|7232950|gb|AW568301.1|AW568301
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|7232862|gb|AW568214.1|AW568214
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|15664968|gb|BI702339.1|BI702339
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|31474246|gb|CD416274.1|CD416274
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|11689158|gb|BF596834.1|BF596834
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|120531718|gb|EH259851.1|EH259851
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|21889217|gb|BQ742430.1|BQ742430
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|254341148|gb|GR854876.1|GR854876
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|24136180|gb|BU926690.1|BU926690
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|31456593|gb|CD398621.1|CD398621
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|58014661|gb|CX701403.1|CX701403
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTEST: gi|31311388|gb|CD396591.1|CD396591
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
EST: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGG AAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttt ... ttcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGgtaagttttttcaattgtaatgagtcagtttttttctatttgcacttcttttttatattgtaagttgctatttgtgttttataattttccgttccttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA