Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGGTTAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattatttatatcttctcatgctatgcaatttcctgtgttttagattatatttttttgactatgggatggtggaaatgtgaatag

Basic information

species Glycine max
transcript GLYMA10G37720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 5'ss of exon 1
TGAAGAAGGTTAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattatttatatcttctcatgctatgcaatttcctgtgtttta--gattatatttttt-tgactatgggatggtg--gaaatgtgaatag----------
|||||||||| |||||  | ||||||||||| ||||| |||||||| ||   ||   ||||||| ||||||||||| || || || |||||||||||||||||      |  | || |||   | |     |  ||  ||  ||  ||| | |||||   | ||| |   || ||   ||| |     ||           
TGAAGAAGGTGAATTTCCTAGAATGGAAGAGAGAAGGTGGTCACAGGGAAGCCCATGTTATGCACCGCTACCATGTCACGGGCCGAGACGATTACAAAAAgtaaacccca-gttttttcactttctcagtctctctaagtcctaaagatcaaattttccgtcactttcttattgttttgaactacttttattcattctgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207750999|gb|GD723048.1|GD723048
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|151407029|gb|EV276844.1|EV276844
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193481063|gb|FK444782.1|FK444782
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193720055|gb|FK653939.1|FK653939
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193421658|gb|FK386219.1|FK386219
EST:     GTTAC-GGCCGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208081615|gb|GD879945.1|GD879945
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207711447|gb|GD693601.1|GD693601
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208136558|gb|GD934156.1|GD934156
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193678476|gb|FK618866.1|FK618866
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208229560|gb|GE022964.1|GE022964
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193420490|gb|FK390483.1|FK390483
EST:     GTTAC-GGCCGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193327736|gb|FK295493.1|FK295493
EST:     CGGGACGATTACAAAAA                         ATAATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagAT-ATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|208116415|gb|GD914502.1|GD914502
EST:     CGGGACGATTACTAAAA                         ATATTCTAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTC-AGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|57574334|gb|CX547309.1|CX547309
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192295691|gb|FG990545.1|FG990545
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207777260|gb|GD750441.1|GD750441
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTGTGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208274082|gb|GE072376.1|GE072376
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58014941|gb|CX701683.1|CX701683
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA