Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttgattgatgtgtctctatgcaactattgctgtgtcattctttttgtttcaaagaattttaattttttttgcatttgctattcttgtttgttgt...

Basic information

species Glycine max
transcript GLYMA10G37690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37690.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g37130.1 (Oryza sativa), 5'ss of exon 2
TAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttgattgatgtgtctctatgca----actattgctgt-gtcattctttttgtttcaaagaattttaattttttttgcatttgctattcttgtttgttgt
 | ||  |||||||||||| | ||||| ||||||||||| || ||| |||| ||||| || |||||| |||| || ||||| || ||||| || || ||||| | ||   |          ||   ||    | | ||||||| |||   |||  | ||  |   |||| |   |   |   |  |    |||         |  
AACGGGTGTTTATGCTTCTTTATTTGGAGTTGGAGCTCCCGAAGCTCTGGTCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAGgtaaactctttcccaacaaacctggacatcatatttttgctgttgtccggcttcctattctagctaattct---tcactaaaccctcagcattagcaccatat--

upper sequence: GLYMA10G37690.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G52440.1 (Arabidopsis thaliana), 5'ss of exon 2
TAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttgattg---atgtgtctctatgcaactattgctgtgtcattctttttgtttcaaagaattttaattttttttgcatttgctattcttgtttgttgt
|| | || ||  ||| ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||||||||| ||  |  |||    |||     |     |  |||| | ||  ||  | | | |||   ||  ||| |     || || ||| |   |  ||  ||  | |
TATGATGATTCGTGCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGgttagtgtctttgtgtgtgtaaaatttcttgatgattgatttggaatcatatcttttt---agggtttaagcaacttatgaattagtactgtttagtttctct

upper sequence: GLYMA10G37690.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g00800.t01 (Vitis vinifera), 5'ss of exon 2
TAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttgattgatgtgtctctatgc----aactattgctgtgtcattctttttg-----tttcaaagaattttaattttttttgcattt---gctattct--tgtttgttgt-----------------------------------------------------------
 || ||||||||||| ||||| ||||||||||| |||||||||||| |||| ||||| || || ||||||||||||||||| || ||||||||||||||||| | ||   |  || |   |  |  |     ||  |   ||| |     |||| |     | |      || |||||| ||   ||||||   |  | | |  || | ||||                                                            
GAAAGTGGTTTATGCATCTCTGTTTGGGGTTGGGGCTCCTGAGGCTCTGGTTATTGGAGTGGTAGCTTTGTTGGTTTTTGGTCCCAAAGGTCTTGCTGAGgtaatctgtgtatatataattgaaaactgaagaccttatttgtatggaagttttagaaaaatgtttggttatcttaattattgaagcattttgggtgactgtaatgctggttgcagagacttagattctgtgttttgccttttagtatctttgtttttattatcttaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321000|gb|FK013502.1|FK013502
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttga ... ctaaatgcagGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
EST: gi|151401377|gb|EV271191.1|EV271191
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTAAAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttga ... ctaaatgcagGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
EST: gi|192321001|gb|FK013503.1|FK013503
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttga ... ctaaatgcagGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
EST: gi|13482016|gb|BG511359.1|BG511359
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttga ... ctaaatgcagGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
EST: gi|151404534|gb|EV274348.1|EV274348
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagcttga ... ctaaatgcagGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAA