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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgcattcagaagttaaattttcttcttaaccattggcag

Basic information

species Glycine max
transcript GLYMA10G36620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgcattcagaagtta--aattttcttcttaaccattggcag
|||||| || ||||| ||  | ||||| || || ||||| ||||| || |||||||| |||||||| ||| | ||||||||||| |||||||||||||| ||| |  |  |  |||||| | |  |  |  |       |||         | |  ||  ||||||| | | |  | |   |||
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagt--aattttaaatccttctatattcaatgttagaatggagggcacatactaattttcgtttcatgcctcttcag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattga-attttcactattggtccaaggtccattaatgcattcagaagttaaattttcttctta-accattggcag
 |||||  | ||||| ||  |||||||||| || ||||| ||| | || |||||||| |||||||| ||| | ||||||||||| ||||||||||| || ||||      |    |  | |  || || ||  |  |  |  | || || || |   ||| ||| || || |  || ||  |||
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtcctttaatgttc--acttttagaattggatgcatatactaa-tttgctcctcatgcctttttcag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgc---attcagaagttaa-attttcttcttaaccattggcag
|||||| |||||||| ||  |||| ||||  || ||||| ||| | || || || |||||||| || ||| | ||||||||||| |||||||||||||| |||||       |||  ||   ||||      | ||  |||   |    |   | |   |||   | | |   |  || ||  |||
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagg---gcagaaactttggtatt--ctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggt-ccattaatgcattcagaagttaa-attttcttcttaaccattggcag
| |||| ||||| || ||  ||||||| |  || ||||| ||| | || |||||||| |||||||| ||  | ||||||||||| |||||||||||||| |||      |  |||  |||  ||||     |   |  |   | |  | |   |   | |   | |||   |  || ||  |||
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtg---cagacagaaacttcgatattctataagtatatcggaattaaacttgtatactgacgctgtctgtcttgcctttttcag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgcatt-cagaagtta-aattttcttcttaaccattggcag
| | || ||  | |||||| | | |||| || | |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || | | |   | |  |  | || |   |   |     |  |||| ||| | ||  |||  ||| || | ||     ||| |||
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaa---agaaatgtattgctgattttatgattgtcctgtttttgcttgtcag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgcattcagaagttaaattttcttcttaaccattggcag
| | || ||  |||||||||| || ||| || | |||||||| || || ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || | | || ||   ||||   | ||  |  || ||   ||  ||        | |    | ||||  || |   ||  |||
TCTTCCATTTACAGAGCTTCTTAAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGgtaaat-gtgtttgctttttg-tgtta-tgtaacgtttcttgttgttggttctaatggtgtcttctcttttatgcttaacag

upper sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 2
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgt-attgaattttcactattggtccaaggtccatt--aatgcattcagaagttaaattttcttcttaaccattggcag
| | ||| | ||||||||||| |||||||| || ||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| || |||||||| ||   || | ||||   | |   | |  |   |   |  |||  |||   | ||||||||| || |     |||||  |  |   
TCTCCCCCTTCCAGAGCTTCTGAAATTTGTATTATTTGCGAACTTCTCTATTGTTGGAATGAATGTTAGTTTAATGTGGAACTCAGTAGGGTTCTATCAGgtatattctgattgctctgtgtgtttaagcttacattttattgtaataattgcagaagttacatctctaatttaactgtcag---