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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag

Basic information

species Glycine max
transcript GLYMA10G36280.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag
  ||||| || |||||| | ||||||||||| || || || |||||||| || || ||||||||||| || ||||| || || || ||||| || |||||||| || |||   |  ||    |||   | |   ||      |    |||  ||  || ||   |     | || ||                                       
TTGATCCTAATAATGTTCTACAAAGTTGGGACCCAACTCTGGTCAATCCGTGCACTTGGTTTCATGTTACTTGCAATAACGACAACAGTGTTATCAGAGTgtacgt-gctaccttttg----tctactatgcaatccacgc-ctcatacatttttattgaaattatctccatttttcag-------------------------------------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag
| ||| | |||||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| || ||||||||||||| |         | | || |||  | |||     |  | || ||    | |||||    ||||   || ||| || ||    |||  |     ||  |           
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaagttgatga-----aaaaagctctcatatattc-----gtatcaaaag----tgttaat----gatgttctc-ctactggttctaagtgtaccccctttcacag---------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttct---gcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag
  ||| | |||||||| ||||| ||||||||| | || ||||| ||||| |||||||||||||| || || || ||||  ||||| ||||| || ||||||||||| | |         | | || |||  | ||| ||     |  | |      |  |      |    | | |   |  |  ||  |                             
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatga------aaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag---------------------------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagtt-gcttgttcctgga-tatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag
| ||||| || |||||| | |||||||||||||| || || ||||| ||||| || ||||||||||| || ||||| ||||| || ||||| || |||||||| |||  | | |||||  | ||| | |||   ||   ||   | |   | |  | |  || |  | |     || |      |||||                             
ATGATCCTAATAATGTTCTACAAAGTTGGGATCCCACTCTGGTCAACCCCTGCACTTGGTTTCATGTTACCTGCAATAATGACAACAGTGTTATCAGAGTgtaggttcaccttttcctccactatatttcatcagtgagttgcacatattctgtgtttcgtactgaaag-----tttttcctcatttgcag---------------------------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag
| |||  |||||| ||  |||| ||||||||||| || || || ||||| ||||||||||| ||||| || || |||  |||||| |||||||| ||| ||||||||| |         ||||||      ||||| |||| |||     |      | ||   ||  ||||   |  ||| ||   || || | |    |||||| |        
AAGATAACAACAACGTGCTGCAGAGTTGGGATCCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGATAACAGTGTCATCAGACTgtaagttgatca------aatatct------tgttcattctcccttggagg------tgaa---agactgaccatttgaatatt---gtctg-tttcccttttgctag--------

upper sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag--
|||| || ||||||||  | || ||||||||||| || |||||||| ||||| |||||||||||||| || ||||| | |||||||||||| |||||||||||||  |||| | |||  |||  | |  | |    || ||| || |        | | ||| |    |||    |  || |     || |||| ||   ||   |   || |||   
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccat----ttactggctcagtgtaacttgtgaattgct--tgatccatgaaacgccc-tgtatgatgttgctttccatatattttcacag