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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGgtatatatatatatttagttatcacaatgcaatttgcttgacaccaatatgttcacttaaagggacataattaatcatctttaagtaattatagttcaaaaaaacaaaagtcaactttagaaatttgataaactcatggagcaaagacatatcatgcatatgacattatagttacaagatgtgcttgaaatatgcag

Basic information

species Glycine max
transcript GLYMA10G36050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36050.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G71930.1 (Arabidopsis thaliana), 5'ss of exon 1
GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGgtatatatatatatttagttatcacaatgcaatttgcttgacaccaatatgttcacttaaagggac-ataattaatcatctttaagtaattatagttcaaaaaaacaaaagtcaactttagaaatttgataaactcatggagcaaagacatatcatgcatatgacattatagttacaagatgtgcttgaaatatgcag
||||| ||||||||  | |||||||| || ||  | || |  | | ||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||  ||||| || | |      |   || |   || ||  ||   ||   | |  |  | || |  | | | |||  |||     | |    ||||   |                                                                                                 
GTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatat-taatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaaattgtctagttatgacataagttttga-------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G36050.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g01060.t01 (Vitis vinifera), 5'ss of exon 1
GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGgtatatatatatatttagttatcacaatgcaatttgcttgacaccaatat-gttcacttaaagggacataattaatcatct-ttaa-gtaattatagttcaaaaaaacaaaagtcaactttagaaatttgataaactcatggagcaaagacatatcatgcatatgacattatagttacaagatgtgcttgaaatatgcag
||||  |||||||||||||||||||| ||||| || ||||| ||||||||||||||| | || || ||||||||||  ||||| ||||||||||| |||||||        || ||||||  ||  || ||| | |    | |  || || ||  | ||||   ||  ||||  | | | | ||||  ||  | | |||       |       ||                                                                                    
GTGGATTATTACCTCAAGAGGAAGATCAACTCTCTTAAAATTGATCTAGATGTTATTATCGAAATCGATCTCTACAGGATGGAGCCATGGGACATCCAAGgtac-------taattagtt--caatatacaaatgg---aaaagaaacatcgtagatttaagaagaattaatagagcttttgttaacatagatgtggttttggttcatttgtaacag-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345057|gb|GR855714.1|GR855714
EST:     TGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAG                         ATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCC
genomic: TGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGgtatatatat ... aaatatgcagATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCC