1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttgaatgtgcaatgcattgactcctttgagggtgtttgtttttagttgccgtactagttgactaaatcacatggataatgttggttttctttt...
species | Glycine max |
transcript | GLYMA10G35960.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|208231214|gb|GE033473.1|GE033473
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|208303495|gb|GE100904.1|GE100904
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193310749|gb|FK277543.1|FK277543
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|13790727|gb|BG653318.1|BG653318
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193325967|gb|FK288138.1|FK288138
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|208143713|gb|GD943402.1|GD943402
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGEST: gi|193515200|gb|FK473756.1|FK473756
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAG
EST: AGTTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|208337961|gb|GE134349.1|GE134349
genomic: AG-TTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193645104|gb|FK587846.1|FK587846
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193569049|gb|FK525736.1|FK525736
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193527959|gb|FK483461.1|FK483461
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCAEST: gi|193600404|gb|FK554225.1|FK554225
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCA
EST: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAG ATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTG
genomic: GAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttg ... aaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGgtgagctttgaatgtgcaatgcattgactcctttgagggtgtttgtttttagttgccgtactagttgactaaatcacatggataatgttggttttctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG