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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatctctgctctcaatctgttgagtactggatatttttaatctttatttgaaattgttgaatgaaaatttagctttgttgagtggaag...

Basic information

species Glycine max
transcript GLYMA10G35900.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35900.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0109g00370.t01 (Vitis vinifera), 5'ss of exon 2
TTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatct-ctgctctcaatctgttgagtactggatatttttaatctttatttgaaa-ttgttgaatgaaa-atttagctttgttgagtggaag
|| |||||| ||||||||||| || ||||| |||||||| |||||||||  ||||||||| |||||  | ||| |||||||| |||| || || ||||||||| | | |||| || |  |||| || |  |  |   | |    | |  ||  | |||  |  |   |||||| | |||| | ||| ||   |||    |   
TTATGCCTTCGCAGAATATGAGACAGAGGAAATTGCAGAATATGCTGTCAAGCTTTTCTCTGGCCTTGTGACATTGTACAACCGAACCCTGAAATTTGCGgtgagatgttgatatttattgctttctacttactacatccctagtctaattgctgtttggtgaatgcttgttgcaagaaatagttacctagattgtcatg---

upper sequence: GLYMA10G35900.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0089g00220.t01 (Vitis vinifera), 5'ss of exon 2
TTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatctctgctctcaatctgttgagtactggatatttttaatctttatttgaaattgttgaatgaaaatttagctttgttgagtggaag
|||||||||||| |||||||| || ||||| |||||||| |||||||||  ||| ||||| |||||  | |||||||||||  ||||||| || ||||||||| |  ||    |||| |    || |  |  |   ||  |    |  |  |  |   ||||      |    ||     |     | |||   | ||  
TTTTGCCTTTGCTGAATATGAGACCGAGGAAATTGCAGATTATGCTGTCAAGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCGgtgagacctcatgatctgttgcttctacttcctagctatagtccctagtctaattgcttttgggtaaatgccttgtttgctagaaatggttacctagatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685656|gb|AW756304.1|AW756304
EST:     GGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCG                         ATATCTGGGAGAGACAAAACTACCTCTAATGGTTCTACAGCAATTACCCCC
genomic: GGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttctt ... cattaaacagATATCTGGGAGAGACAAAACTACCTCTAATGGTTCTACAGCAATTACCCCC