Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttctaaactctatggtcaatgctcttaatatgcatatatttcagatttcttgatgataccagtacctggtagtttgtttgactggttcttagtt...

Basic information

species Glycine max
transcript GLYMA10G35750.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590406|gb|DB968040.1|DB968040
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192302155|gb|FG997263.1|FG997263
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|214007866|gb|DB986455.1|DB986455
EST:     AAGGAATTCAGG-A-TCGCTTGGCCGATATGTACAAGGAGCATTATGAGA                         GCATTGAAGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAGGAATT--GGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192334425|gb|FK024118.1|FK024118
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192334424|gb|FK024117.1|FK024117
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|23734897|gb|BU765699.1|BU765699
EST:     GGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: GGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298172616|gb|HO019656.1|HO019656
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|58018430|gb|CX705172.1|CX705172
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|4290733|gb|AI437519.1|AI437519
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151403195|gb|EV273005.1|EV273005
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151413076|gb|EV282884.1|EV282884
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|15286464|gb|BI470355.1|BI470355
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|14990063|gb|BI315736.1|BI315736
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192320476|gb|FK012334.1|FK012334
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192295734|gb|FG990828.1|FG990828
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|213589697|gb|DB973256.1|DB973256
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151399048|gb|EV268919.1|EV268919
EST:     AGAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|18848601|gb|BM567756.1|BM567756
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|9564208|gb|BE473717.1|BE473717
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192329215|gb|FK020134.1|FK020134
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|19938147|gb|BQ081583.1|BQ081583
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|31464426|gb|CD406454.1|CD406454
EST:     GTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCATAGTTTGTTGACACAGTAACTCCTCTATACAAGACT
genomic: GTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCA-AGTTTGTTGACACAGTAACTCCTCAATACAAGACT
EST: gi|213597321|gb|DB964394.1|DB964394
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192320477|gb|FK012335.1|FK012335
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|209699416|gb|BW664135.1|BW664135
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298163206|gb|HO011939.1|HO011939
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|15663571|gb|BI700942.1|BI700942
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|213606671|gb|DB972555.1|DB972555
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298172356|gb|HO019396.1|HO019396
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACCCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|19934667|gb|BQ079697.1|BQ079697
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|4405525|gb|AI507674.1|AI507674
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACT
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATT-GAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACT
EST: gi|254345423|gb|GR855866.1|GR855866
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192308179|gb|FK001277.1|FK001277
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|15202357|gb|BI425359.1|BI425359
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192309712|gb|FK001018.1|FK001018
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|208058731|gb|GD858203.1|GD858203
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAAGTAACTCCTCAATA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACA-GTAACTCCTCAATA
EST: gi|193723412|gb|FK657120.1|FK657120
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192302154|gb|FG997262.1|FG997262
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192299291|gb|FG988691.1|FG988691
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|8282974|gb|BE020535.1|BE020535
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298199220|gb|HO042583.1|HO042583
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|9987567|gb|BE661675.1|BE661675
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|8401548|gb|BE057112.1|BE057112
EST:     GCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: GCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298170488|gb|HO019112.1|HO019112
EST:     AAAAGGAATCGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|58021780|gb|CX708521.1|CX708521
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298166983|gb|HO010422.1|HO010422
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCGTTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|209699417|gb|BW664136.1|BW664136
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|12496502|gb|BG047096.1|BG047096
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|19935135|gb|BQ080165.1|BQ080165
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151404461|gb|EV274275.1|EV274275
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298163051|gb|HO011784.1|HO011784
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298184504|gb|HO029717.1|HO029717
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|254345422|gb|GR855865.1|GR855865
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298172709|gb|HO019749.1|HO019749
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGGGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|58014671|gb|CX701413.1|CX701413
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298179912|gb|HO025127.1|HO025127
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|193639952|gb|FK594005.1|FK594005
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298191701|gb|HO035783.1|HO035783
EST:     AAAAGGAATTGGCACTCGCTTGGTG-ATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|58019285|gb|CX706027.1|CX706027
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|193494508|gb|FK458058.1|FK458058
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAA
EST: gi|298163644|gb|HO012377.1|HO012377
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|192308180|gb|FK001278.1|FK001278
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|213617607|gb|DB969319.1|DB969319
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|37994969|gb|CF806558.1|CF806558
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|6963937|gb|AW432630.1|AW432630
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151409411|gb|EV279219.1|EV279219
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|298189156|gb|HO037559.1|HO037559
EST:     AAAAGGAATTGGCACTCGCCTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|24135641|gb|BU926151.1|BU926151
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|213601186|gb|DB956494.1|DB956494
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|21678267|gb|BQ630618.1|BQ630618
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|8402877|gb|BE058511.1|BE058511
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
EST: gi|151410606|gb|EV280421.1|EV280421
EST:     AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGA                         GCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA
genomic: AAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttct ... ctttttacagGCATTGAGGTCCCCAAGTTTGTTGACACAGTAACTCCTCAATACAAGACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCTGAACCCATAGACTGGGATTACTATAGAAAAGGAATTGGCACTCGCTTGGTGGATATGTACAAGGAGCATTATGAGAgtatgtttctaaactctatggtcaatgctcttaatatgcatatatttcagatttcttgatgataccagtacctggtagtttgtttgactggttcttagtt

- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA