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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATAAATGAGGACTCTATGCTTAGATGTCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttactgagaatgat...

Basic information

species Glycine max
transcript GLYMA10G35680.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35680.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G394410_T01 (Zea mays), 5'ss of exon 2
---AGACATAAATGAGGACTCTATGCTTAGATGTCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTT-TTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtat---gggttttgctgtgaccttccatgtttactgagaatgat-
   |  | |     |  |    ||    || || |||||| |||||||||||||||||||||| |  || || ||||  | |  |     |  ||     |  ||    |||    |  |   |      ||| |||    |||  ||  || ||    |  || |   ||      |  |||  |    ||||| |||    |||  
AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcactggtgttctggaacgatcgctgaattctattgtttgctgcttgtgaag

upper sequence: GLYMA10G35680.3 (Glycine max), 5'ss of exon 2
lower sequence: AT4G25030.1 (Arabidopsis thaliana), 5'ss of exon 2
AGACATAAATGAGGACTC---TATGCTTAGATGTCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccat-agttgacataattctcat-tttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttactgagaatgat
   |||   |    | |     || ||  |||| || ||||||||||||||||||||||| |||||| |||| |||| |||| | ||| |||| || || ||||||||| | | ||  |  ||| ||   ||  | |  ||| |  |  ||| |   ||      ||    | |   |                           
---CATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCCCACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTgtaagtaaccgtctgttggttcactccatattgacatttcttatagattctgatcttgtctcatcatatatatag---------------------------

upper sequence: GLYMA10G35680.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g03990.t01 (Vitis vinifera), 5'ss of exon 2
--AGACATAAATGAGGACTCTATGCTTAGATGTCCATTCTTGAGGAACATCAATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatcctccatagttgacataattctcattttatcttttattttagcctgcatgtatgggttttgctgtgaccttccatgtttactgaga--atgat
   | | |   | || |    || |||||||||||||| ||||||||||||||||| || || || ||||| ||    |||||  ||||||| ||||||||||||||||||      |  |        ||  ||  | |  || |  ||     |      ||  | |||  | |  | |         | ||||   ||| |
TCTGCCTTC--TCAGCAGGACATACTTAGATGTCCATTTTTGAGGAACATCAATGAACCCACAAATTTCTCCTTTGCCTCACCCATGGCTTTCCCAATGCCTgtaagttatttcttctgctcacttccctttgcacatgaagttattcttctaaatattgccataagattt--tatttcatctggatcccaatgagttcatggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401008|gb|BM177790.1|BM177790
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192330388|gb|FK021175.1|FK021175
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|207836679|gb|GD807012.1|GD807012
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTACCCAATTTTGATTT
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGT-CCCAATTTTGATTT
EST: gi|21678119|gb|BQ630461.1|BQ630461
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192306573|gb|FG997243.1|FG997243
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192326462|gb|FK017719.1|FK017719
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|21678189|gb|BQ630540.1|BQ630540
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192307013|gb|FK002679.1|FK002679
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|7686557|gb|AW757205.1|AW757205
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|151412720|gb|EV282532.1|EV282532
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG