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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGTGCTGTGCTTTCAGAAACACAAGAAGAGCTGAAACGGATTATCCCTATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaaaatttacaaaatcatattattaattcatttcccttatatgaaaatcatgcctattaattcaatataatttatcgatttttataataattg...

Basic information

species Glycine max
transcript GLYMA10G35650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04050.t01 (Vitis vinifera), 5'ss of exon 2
TTGGGTGCTGTGCTTTCAGAAACACAAGAAGAGCTGAAACGGATTATCCCTATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaaaatttacaaaatcatattattaattcatttcccttatatgaaaatcatgcctatta-attcaatataatttatcgatttttataataattg-------
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TTGGATGCTGTGCTTTCAGAAACACGAGAAGATCCGAAACCGATTACCCATACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactat-aacatttgcatttgtggtaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726461|gb|AW310815.1|AW310815
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGNTTTATTAGNTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|192301741|gb|FG994421.1|FG994421
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|58020466|gb|CX707208.1|CX707208
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTCCCATTG                         GTGGAGGTGGTTCCATGCCAGGAGAGACCAGCTTTATTAGCTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|6726259|gb|AW310613.1|AW310613
EST:     GTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
genomic: GTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC