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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGAAAATCAGCCTCAACAAGGGATATGTGGCTGGTATATTAACAGTGGATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaagcttgcttctggattgtgtctttaagatttgcatcttaaattttgtcaacttcatgattcaccatcttgttcttgttgcttcttaatgaa...

Basic information

species Glycine max
transcript GLYMA10G35500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35500.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04360.t01 (Vitis vinifera), 5'ss of exon 2
ATGGGAAAATCAGCCTCAACAAGGGATATGTGGCTGGTATATTAACAGTGGATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaagcttgcttctggattgtgtctttaagatttgcatcttaaattttgtcaacttc--atgattcaccatcttgttcttgttgcttcttaatgaa-
|||||||| ||||  | |||||||| ||||| ||||| ||||||||||||||||||||||| || ||||| || ||||| || ||  | || || ||||||||||||     ||  |  |   |  | |   | | | |    |  || ||| || ||   |   | ||||   |||     |     |   | |  ||||  
ATGGGAAATTCAGTTTTAACAAGGGGTATGTAGCTGGGATATTAACAGTGGATACTGTTGCTGATTTTCTACCAAGGAAAGGCCCGCTTCGCCAAAGAAGgtgagtttggtattcttctt---tcctattcctgaaactattctgatagattgtgccattgtacaaggatttgacatgcaaatgcaactagatttggatgagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7638850|gb|AW733243.1|AW733243
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|193696680|gb|FK637920.1|FK637920
EST:     TCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: TCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|207720793|gb|GD701276.1|GD701276
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAA
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAA
EST: gi|207784344|gb|GD758991.1|GD758991
EST:     GCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|208076821|gb|GD877374.1|GD877374
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATA
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATA
EST: gi|208294353|gb|GE093052.1|GE093052
EST:     GCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|192314251|gb|FK006989.1|FK006989
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|192318279|gb|FK007253.1|FK007253
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|193645894|gb|FK593879.1|FK593879
EST:     ATACTGTTGCAGACTTTCTTCCTAGGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: ATACTGTTGCAGACTTTCTTCCTAGG-AAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|193463308|gb|FK429122.1|FK429122
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGG-CCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCAGTCCGGGAAAAATTTAGGCG
EST: gi|207811905|gb|GD783154.1|GD783154
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTG
EST: gi|193395874|gb|FK364443.1|FK364443
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAATGTGGCAAGTACCGGGAAAAAATTTAG
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAATGTGGCA-GT-CCGGGAAAAA-TTTAG
EST: gi|193715568|gb|FK651167.1|FK651167
EST:     GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAG                         GACTGGAGTTGCATACATATCGAAT
genomic: GATACTGTTGCAGACTTTCTTCCTAGGAAGGGGCCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAGTTGCATACATATCGAAT