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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattacatgtgtagccttatagttctgatgatgcttgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctag

Basic information

species Glycine max
transcript GLYMA10G35320.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 1
TTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattacatgtgtagccttatagttctgatgatgct-tgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctag---------
||||||||||||  | ||||| | ||| ||||| ||||||||||| ||||| || || || || |||||||| ||||| ||||| ||||||||||||||||| ||  |      |  |  || |    ||| ||   | |   || | ||| | | | |   ||  |   || || | | |  |  | | |         
TTGTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTACAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGgtaaacgaagaaatt--ctataaaaaggtgaagactttgtttttgtttgatgaagatatacatatgattggtgtttctattgtttttgttgattttgtag

upper sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 5'ss of exon 2
TTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaa----ttacatgtgtagccttat--agttctgatgatgcttgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctag---------------------------------------------
||||||||| || ||||| || |||||||| || ||||| |||||||| || |||||||| || |||||||| |||||| |||||||||||||||| |||||| |    |||| |    |  ||  |  |||| | || |    ||  |         | ||   | ||    |   |||| |   |  | |                                                 
TTGTGCTGCATCACTTGCCGTAAAATTTGCGAACAATGGGCACCCCACACTAGTGGTTTCAACTGATCCAGCACATTCTCTGAGTGATTCTTTTGCCCAGgtttaaatattactttctaatactggtcaagttatcataacttctgtttaactatcctttctgcttttacactagaatttgtatgataaattgcttcatttctttgtgtgcatgtctgtatgtggctcggatatgattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207787687|gb|GD761485.1|GD761485
EST:     AGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: AGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|298195047|gb|HO043575.1|HO043575
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGAGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|7692581|gb|AW760684.1|AW760684
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|9564725|gb|BE474234.1|BE474234
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|209716152|gb|BW662337.1|BW662337
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT