Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACTCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATGgtaggtcagttgcatctcggcaatggatgttactttgagcttcatttttgcatttgagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctag

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 2
AATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACTCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATGgtaggtcagttgcatctcggcaatggatgttactttgagcttcatttttgcatttgagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctag
  || | ||   | | | |||||||| || | |   ||||||||||||||| |||||||||| || ||||| ||||||||| || | |  |||||| ||  | |          |||| ||     | ||| ||||| || ||    | |     ||||   || |||    | || || ||      || || |  ||  ||
GGTGGACAATTAAGGCATTGTGACAAATGTTGTATCTACAAGCCTCCCAGGGCTCATCATTGCCGTGTTTGTAGAAGGTGTGTTTTAAGGATGgtatgtgtgcta--------gaatgaattgatttatgatcttcagttatgaccataa----ttgaatttttaattgatgctttcttctca---cactaaaatcaatgcag