1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgtgctgagttcttggattgctcatattttgctaaattctttgatttttttatgagaattaagaaggaaaaaatagcttttttcctatagggt...
species | Glycine max |
transcript | GLYMA10G35230.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|193543327|gb|FK502506.1|FK502506
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: AATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|151394915|gb|EV264786.1|EV264786
genomic: AATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|192326781|gb|FK018908.1|FK018908
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|193724791|gb|FK658075.1|FK658075
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|15813084|gb|BI785359.1|BI785359
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|308098577|gb|HO760318.1|HO760318
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|298165609|gb|HO011658.1|HO011658
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTGCGAEST: gi|298182667|gb|HO031402.1|HO031402
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|298183380|gb|HO028593.1|HO028593
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|7286166|gb|AW598653.1|AW598653
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|192296028|gb|FG989422.1|FG989422
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|298177777|gb|HO027330.1|HO027330
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|151411846|gb|EV281657.1|EV281657
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|298185154|gb|HO030367.1|HO030367
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|15201204|gb|BI424748.1|BI424748
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGAEST: gi|298174351|gb|HO017687.1|HO017687
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
EST: CCAATTCAGAGAATGGTGGAGGACAGGACGCCAAGAATCTGAGGGTCAAG CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
genomic: CCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgt ... ctggaaacagCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGgtatttgtgtgctgagttcttggattgctcatattttgctaaattctttgatttttttatgagaattaagaaggaaaaaatagcttttttcctatagggt
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGG