1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataatcgcttctaaatttctcctttttttttgttgctcgtacgaagaaaattgaagttctgttccgctacgtgatttcaaatcaaattttgatcatcgactattttgatttttattgctttttcactatagcagtactgaacactgagttcgttagagttaatgattttcatccaacacgcgttgttgtag
species | Glycine max |
transcript | GLYMA10G35210.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|207680094|gb|GD663708.1|GD663708
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|213611506|gb|DB960786.1|DB960786
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|193630879|gb|FK580512.1|FK580512
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGEST: gi|193520537|gb|FK475546.1|FK475546
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAG
EST: GGAGCATTCGCAAAAAAGAGCTCCTCAACATCCTCAAGTAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTEST: gi|193329364|gb|FK296546.1|FK296546
genomic: GGAGCATTCGCAAAAA-GAGCTCCTCAACATCCTCAAG-AATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCT
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|193643308|gb|FK590791.1|FK590791
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|193528642|gb|FK486860.1|FK486860
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCEST: gi|193510551|gb|FK468057.1|FK468057
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: AACATCCTCAAGAAT GTTCGAGGAAAGAAGNGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: AACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataatcgcttctaaatttctcctttttttttgttgctcgtacgaagaaaattgaagttctgttccgctacgtgatttcaaatcaaattttgatcatcgactattttgatttttattgctttttcactatagcagtactgaacactgagttcgttagagttaatgattttcatccaacacgcgttgttgtag
- - - - - - - AGAGCT
- - - - - - - - - CTCCTC