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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattcgtaggtgtattttacctttacacttgcttatgctctgacttactcctctctgataccttttcaactctagcttttgctcaccttgtttgccaagttggtttatatttattttgacgttattttttcccctttttcttttacatcggtgaag

Basic information

species Glycine max
transcript GLYMA10G34430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 3
AAAACAGCTTATGTGAAGTTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattcgtaggtgtattttacctttacacttgcttatgctctgacttactcctctctgataccttttcaactcta-gcttttgctcac-cttgtttgccaagttggtttatatttattttgacgttattt--tttcccctttttctt---ttacatcggtgaag-------
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| |||| ||| |||||||||||  | |||||||| |||| |||||| | | |  | | |      |   ||  | || |||     |     ||||  ||     |    | | | ||| |  | ||  ||||||| ||    |  | | |  |||||||      ||||  |||  | |||  | |   |  | || ||| |        
AAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattcttggttaaaatctggtcagaagtttaat-attctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208167569|gb|GD965179.1|GD965179
EST:     TCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTAT                         ACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCA
genomic: TCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattc ... atcggtgaagACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCA
EST: gi|207777797|gb|GD749760.1|GD749760
EST:     TCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTAT                         ACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCA
genomic: TCCAGGCATTGTGCGGTTATATTTCACATTTCAAGACTCATTTTCTCTATgtaagtattc ... atcggtgaagACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCA