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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGCGCAATAAATGAAATACAGAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGgtaatctctatgacattaatttaattagttattggaagaacatatgtcttacatgcttctgaacttaatttgctatctgattag

Basic information

species Glycine max
transcript GLYMA10G34220.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34220.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g05360.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGCGCAATAAATGAAATACAGAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGgtaatctctatgacattaatttaatt-agttattggaagaacatatgtcttacatgcttctgaacttaatttgctatctgattag---------------------
||| |||||||||||| |||| ||||| || ||| ||||||| |||| ||||||||||   |  ||  | |||||||| ||  |||| ||  | |||||||| ||||  ||||   |  ||| | | |||||       ||  |||   | |  ||| | |  |           |  |||||||                     
ATTTTTTCCTGGAACTTCTGACAGGATCATTATGATATCTGGAGCAACAAATGAAATAATTAAAGCAATGGAACTTATTCTGGCTAAATTATTGAGTGAGgtgatcttcatgattctgcttttactcagtta------aaatttatcattaatttgcctattgaaaaggaaaaagaattgattagttgtattctggtcttgaggct