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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTGGTTGAGCCGGATGCTTTTAAGGAAAATGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaacatgacctccatgttattattatcatttttccactaactctccacactaatgtatgtgcagcatgtgactaatgttataggaatccaaaatatattatcaaaatggatgagatatattagatccttataagctatttttaacaaatgattgctttaattaaatttatcaaaatctgaacag

Basic information

species Glycine max
transcript GLYMA10G32900.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32900.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTGGTGGTTGAGCCGGATGCTTTTAAGGAAAATGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaacatgacctccatgttattattatcatttttccactaactctc-cacacta-atgtatgtgcagcatgtgactaatgttataggaatccaaaatatattatcaaaatggatgagatatattagatccttataagctatttttaacaaatgattgctttaattaaatttatcaaaatctgaacag
 |||||  | ||| | || || |||||||| |  || || || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| | |  | |  |  |  |    ||||  |   ||| |   | |     |  || |  ||  ||| || | ||   |     | |   || || |||                                                                                                     
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttcttagttctagctagccatcct-cgattgtgtatatatatttggctttaacatgctacatttctggttatttccttatatatattttag-----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812789|gb|BQ297267.1|BQ297267
EST:     CCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTG                         GTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTAGTGACAGCTTTA
genomic: CCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttct ... atctgaacagGTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTAGTGACAGCTTTA