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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagtattagtattcgtccaaccattttttgttttcattaataattccattcatacatttccgtatttatatttgctctgggttgctttgcag

Basic information

species Glycine max
transcript GLYMA10G32320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagta----ttagtattcg----tccaaccattttttgttttcattaataattccattcatacatttccgtatttatatttgctctgggttgctttgcag--------------------------------------
|||||||| || || || || |||||||||||||||||  | || ||| || |||| |||||||||||||||||||||||||  ||| ||||||||||||    || || || |    || | | |  |   ||| | |||  || || |  ||| | | | |  |    |  ||||      || || | ||||                                      
ATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatgattggttttggcttctctagcaagatcaagttataattgttattttc--tcaaatactccttttagaacttttgtatgatgtagcctggcagtgaagttgatgaaatgatacatgtctttttaactgcag

upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 3
ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagtattagtattcgtcc-----aaccattt--tttgttttcattaataattccattcatacatttccgtatttatatttgctctgggttgctttgcag
|||||||| ||||||||  | |||||| | ||||||||  | || ||  || | || |||||||||||||||||||| ||||| |||||||| ||||||| |  | ||          ||  || |    | || |  ||      ||   |    |||      ||| | |  | | || |||    |   ||
ATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATTgtgagtaatgctcttttcttgcattaatgatatgacctattgtttttggggtgtcttgttgcccataat-acattgacagcttcacttggtcaaatattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394610|gb|EV264481.1|EV264481
EST:     GATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATACA                         AATAAAACGGTTTCTCTCTTTGAGACTACTATCAGGGTCCTCGGAGGATTA
genomic: GATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagtatta ... tgctttgcagAATAAAACGGTTTCTCTCTTTGAGACTACTATCAGGGTCCTCGGAGGATTA
EST: gi|193364513|gb|FK333554.1|FK333554
EST:     TTCTCTGCTTCCGTTGAACGGATTGGTAAAAATCTTCGCTTTGATAATA
genomic: TTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATA-TA
EST: gi|213590535|gb|DB968099.1|DB968099
EST:     GATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA                         AATAAAACGGTTTCTCTCTTTGAGACTACTATCAGGGTCCTCGGAGGATTA
genomic: GATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagtatta ... tgctttgcagAATAAAACGGTTTCTCTCTTTGAGACTACTATCAGGGTCCTCGGAGGATTA
EST: gi|193433551|gb|FK403637.1|FK403637
EST:     ATTCTCTGCTTCCGTTGAACGGATTAGGTAAAAATCTTCGCTTTGATATA                         AATAAA-CGGTTTCTCTCTTT
genomic: ATTCTCTGCTTCCGTTGAATGGATT-GGTAAAAATCTTCGCTTTGATATAgtgagtatta ... tgctttgcagAATAAAACGGTTTCTCTCTTT