1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCATAGACATTGATTTGATTGAGGCTGCTATAAGGGACCCAATGGGGGAGCTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaatattttttggtttagaacatttcttttagacttgctcttatagtgatcttaatgccacacaatagtttacattttacattttctacaagatt...
species | Glycine max |
transcript | GLYMA10G30880.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|13311490|gb|BG405141.1|BG405141
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACA-ACAGAGTTGGAGAGTTEST: gi|18041120|gb|BM309414.1|BM309414
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|151394304|gb|EV264175.1|EV264175
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|9986743|gb|BE660851.1|BE660851
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGNAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTTGGAGAGTEST: gi|254320847|gb|GR827296.1|GR827296
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTT-GGAGAGT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|21993634|gb|BQ785162.1|BQ785162
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|15662691|gb|BI700062.1|BI700062
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAAAGTTEST: gi|298172122|gb|HO021714.1|HO021714
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCEST: gi|151394063|gb|EV263934.1|EV263934
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTC
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAGA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|15338184|gb|BI498848.1|BI498848
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATAGACATTGATTTGATTGAGGCTGCTATAAGGGACCCAATGGGGGAGCTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAAgtaagcaatattttttggtttagaacatttcttttagacttgctcttatagtgatcttaatgccacacaatagtttacattttacattttctacaagatt
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